Details

Title of paper

HCV E1 influences the fitness landscape of E2 and may enhance escape from E2-specific antibodies

Authors

Hang Zhang, Ahmed A. Quadeer and Matthew R. McKay

MATLAB Toolboxes Requirements

1. Bioinformatics
2. Communications System
3. Parallel Computing

Usage

1. Open MATLAB
2. Run main.m

Notes

1. For obtaining the sequence data:

   • GLUE database (http://hcv-glue.cvr.gla.ac.uk)

2. For inferring the maximum entropy models:

   • Minimum probability flow method (MPF-BML) (https://github.com/ahmedaq/MPF-BML-GUI)

Troubleshooting

For any questions or comments, please email at hzhangbr@ust.hk.

License

The MIT License (MIT). Please see License File for more information.