introductionToBioinformaticsBuddCT2014.html

<h1 id="introduction-to-bioinformatics">Introduction to Bioinformatics</h1>
<h2 id="monday-29th-september-2014">Monday 29th September 2014</h2>
<h3 id="embo-practical-course-on-computational-analysis-of-protein-protein-interactions-from-sequences-to-networks">EMBO Practical Course on Computational analysis of protein-protein interactions: From sequences to networks</h3>
<h4 id="september---3-october-2014-uct-cape-town-south-africa">28 September - 3 October 2014, UCT, Cape Town, South Africa</h4>
<h4 id="aidan-budd-embl-heidelberg">Aidan Budd, EMBL, Heidelberg</h4>
<h2 id="presentation"><a href="./presentations/introBioinformaticsBuddCTSept2014.pdf">Presentation</a></h2>
<h2 id="uniprot">Uniprot</h2>
<p>Human Beta-2 adrenergic receptor:</p>
<ul class="incremental">
<li><a href="http://www.uniprot.org/uniprot/P07550">Link to UniProt page</a></li>
<li><a href="./staticVersionsOfRemotePages/2014_09_27_UniProt_P07550_ADRB2Beta2AdrenergicReceptor.html">Local version of UniProt page as of 27.09.2014</a></li>
<li><a href="./staticVersionsOfRemotePages/2014_09_27_UniProt_P07550_ADRB2Beta2AdrenergicReceptor.txt">Local text version of UniProt page as of 27.09.2014</a></li>
</ul>
<p>Gorilla Beta-2 adrenergic receptor:</p>
<ul class="incremental">
<li><a href="http://www.uniprot.org/uniprot/G3QRR6">Link to UniProt page</a></li>
<li><a href="./staticVersionsOfRemotePages/2014_09_27_UniProt_G3QRR6_GORGO_gorilla_AdrenergicReceptor.html">Local version of UniProt page as of 27.09.2014</a></li>
<li><a href="./staticVersionsOfRemotePages/2014_09_27_UniProt_G3QRR6_GORGO_gorilla_AdrenergicReceptor.txt">Local text version of UniProt page as of 27.09.2014</a></li>
</ul>
<p>UniProt manual:</p>
<ul class="incremental">
<li><a href="http://www.uniprot.org/help/?fil=section:manual">Link to manual on UniProt site</a></li>
<li><a href="./staticVersionsOfRemotePages/uniprot_section_manual_in_Help.html">Link to local version of the front manual page</a></li>
</ul>
<h2 id="protein-modules">Protein modules</h2>
<ul class="incremental">
<li>PFAM page showing protein architectures involving the Kinase domain:
<ul class="incremental">
<li><a href="http://pfam.xfam.org/family/PF00069#tabview=tab1">Link to this page on the PFAM website</a></li>
<li><a href="./staticVersionsOfRemotePages/Pfam_Family_Pkinase_PF00069_.html">Local version of the page</a></li>
</ul></li>
</ul>
<p>Use UniProt, or other resources you discover or already know about, to identify predicted/directly-assayed PPI-mediating protein modules in:</p>
<ul class="incremental">
<li>some of your own proteins of interest</li>
<li>if you don't have specific proteins of interest try:
<ul class="incremental">
<li>src</li>
<li>p53</li>
</ul></li>
</ul>