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two more errors in execution (one fixed) #24
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Thank you for the information, and I apologize for any inconvenience this may have caused you. Currently, the reason for the bug is unclear to me. If possible, could you please run your analysis again with the --debug option added? This option retains the temporary directory, allowing you to access all the intermediate files. DAJIN2 --control barcode01 \
--sample barcode02 \
--allele actc1L_cont_knockin.fa \
--name act1c_debug \
--genome xenLae2 \
--threads 8 \
--debug After executing DAJIN2, could you check the presence of the sam/bam file and provide me with the results of the following two commands? ls -l DAJIN_Results/.tempdir/act1c_debug/barcode02/sam/ ls -l DAJIN_Results/.tempdir/act1c_debug/report/bam/ They will help in diagnosing the issue. |
Thanks again for your kind support! Then, "ls -l DAJIN_Results/.tempdir/02/barcode02/sam" showed:
In same manner,
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Thank you! It seems that DAJIN2 generated a proper temporary SAM file... |
Yes, all files seemed to be generated correctly.
|
@takeiga Regarding the error with If it's not too much trouble, could you please verify if the following commands produce an error? If the echo "test1" > DAJIN_Results/.tempdir/02/report/bam/tmp240891_allele1_control_indels_40.876%.sam
echo "test2" > DAJIN_Results/.tempdir/02/report/bam/tmp240891_allele1_control_indels_40.876pct.sam
cat DAJIN_Results/.tempdir/02/report/bam/tmp240891_allele1_control_indels_40.876%.sam
cat DAJIN_Results/.tempdir/02/report/bam/tmp240891_allele1_control_indels_40.876pct.sam |
@akikuno So I tried
This resulted following without any error.
Folder specification of "bam" instead of "BAM" may cause problem? |
Thank you for your confirmation! I'm thrilled with the feedback. |
I am very surprised and grateful for your quick response. |
I'm very grateful for your quick update of DAJIN2!! |
Another errors were occurred when I tried another PC.
I conducted same commands after successful install in another PC:
DAJIN2 --control barcode01/ --sample barcode02/ --allele actc1L_cont_knockin.fa --name act1c --genome xenLae2 --threads 8
But another error was occurred:
I could fix this by updating scikit-learn by pip:
pip install -U scikit-learn
However, an another error was occurred after fixing scikit-learn:
It may be an error in dajin2 code, specifically in pathlib.py?
I'm happy if this error will be fixed by dajin2 update.
Thanks,
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