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alchemlyb.visualisation.plot_mbar_overlap_matrix.rst

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Plot Overlap Matrix from MBAR

The function ~alchemlyb.visualisation.plot_mbar_overlap_matrix allows the user to plot the overlap matrix from ~alchemlyb.estimators.MBAR.overlap_matrix. The user can pass matplotlib.axes.Axes into the function to have the overlap maxtrix drawn on a specific axes. The user could also specify a list of lambda states to be skipped when labelling the states.

Please check How to plot MBAR overlap matrix <plot_overlap_matrix> for usage.

API Reference

alchemlyb.visualisation.plot_mbar_overlap_matrix