The function ~alchemlyb.visualisation.plot_mbar_overlap_matrix
allows the user to plot the overlap matrix from ~alchemlyb.estimators.MBAR.overlap_matrix
. The user can pass matplotlib.axes.Axes
into the function to have the overlap maxtrix drawn on a specific axes. The user could also specify a list of lambda states to be skipped when labelling the states.
Please check How to plot MBAR overlap matrix <plot_overlap_matrix>
for usage.
alchemlyb.visualisation.plot_mbar_overlap_matrix