Name		Name	Last commit message	Last commit date
parent directory ..
phenotype_exploration		phenotype_exploration
01_aou_lipids_phenotype.ipynb		01_aou_lipids_phenotype.ipynb
02_aou_write_filtered_bgen.ipynb		02_aou_write_filtered_bgen.ipynb
03_aou_variant_qc.ipynb		03_aou_variant_qc.ipynb
04_aou_plink_ld_and_pca.ipynb		04_aou_plink_ld_and_pca.ipynb
05_aou_phenotype_for_gwas.ipynb		05_aou_phenotype_for_gwas.ipynb
06_aou_regenie_gwas.ipynb		06_aou_regenie_gwas.ipynb
07_aou_plot_results.ipynb		07_aou_plot_results.ipynb
README.md		README.md

README.md

All of Us siloed analysis

The notebooks in this directory are part of a larger project to Demonstrate the Potential for Pooled Analysis of All of Us and UK Biobank Genomic Data. Specifically they are for the portion of the project that is the siloed analysis performed on the All of Us Researcher Workbench (RWB).

The notebooks have numbered prefixes such that they are listed in the order of execution.