Install allennlp failed with jsonnet build error #2779

whxf · 2019-04-30T08:15:33Z

I meet some question when I install allenlp with pip

pip install allennlp --user

and I get an error when it build dependency, I didn't kown why it is failed?

Building wheels for collected packages: jsonnet
  Building wheel for jsonnet (setup.py) ... error
  ERROR: Complete output from command /usr/local/anaconda3/envs/allennlp/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-install-5igclfl8/jsonnet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-wheel-h870sk60 --python-tag cp36:
  ERROR: running bdist_wheel
  running build
  running build_ext
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/desugarer.cpp -o core/desugarer.o
  core/desugarer.cpp:406:67: warning: unused parameter 'obj_level' [-Wunused-parameter]
      AST* makeArrayComprehension(ArrayComprehension *ast, unsigned obj_level) {
                                                                    ^
  1 warning generated.
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/formatter.cpp -o core/formatter.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/libjsonnet.cpp -o core/libjsonnet.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/lexer.cpp -o core/lexer.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/parser.cpp -o core/parser.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/pass.cpp -o core/pass.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/static_analysis.cpp -o core/static_analysis.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/string_utils.cpp -o core/string_utils.o
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json core/vm.cpp -o core/vm.o
  core/vm.cpp:1337:21: warning: comparison of integers of different signs: 'int' and 'std::__1::basic_string<char32_t, std::__1::char_traits<char32_t>, std::__1::allocator<char32_t> >::size_type' (aka 'unsigned long') [-Wsign-compare]
          while (test < str->value.size() && (maxsplits == -1 ||
                 ~~~~ ^ ~~~~~~~~~~~~~~~~~
  core/vm.cpp:1338:55: warning: comparison of integers of different signs: 'long' and 'std::__1::vector<(anonymous namespace)::HeapThunk *, std::__1::allocator<(anonymous namespace)::HeapThunk *> >::size_type' (aka 'unsigned long') [-Wsign-compare]
                                              maxsplits > elements.size())) {
                                              ~~~~~~~~~ ^ ~~~~~~~~~~~~~~~
  core/vm.cpp:1362:24: warning: comparison of integers of different signs: 'long' and 'std::__1::basic_string<char32_t, std::__1::char_traits<char32_t>, std::__1::allocator<char32_t> >::size_type' (aka 'unsigned long') [-Wsign-compare]
          if (len + from > str->value.size()) {
              ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~
  core/vm.cpp:1419:27: warning: comparison of integers of different signs: 'int' and 'std::__1::basic_string<char32_t, std::__1::char_traits<char32_t>, std::__1::allocator<char32_t> >::size_type' (aka 'unsigned long') [-Wsign-compare]
          for (int i = 0; i < new_str.size(); ++i) {
                          ~ ^ ~~~~~~~~~~~~~~
  core/vm.cpp:1433:27: warning: comparison of integers of different signs: 'int' and 'std::__1::basic_string<char32_t, std::__1::char_traits<char32_t>, std::__1::allocator<char32_t> >::size_type' (aka 'unsigned long') [-Wsign-compare]
          for (int i = 0; i < new_str.size(); ++i) {
                          ~ ^ ~~~~~~~~~~~~~~
  core/vm.cpp:1533:33: warning: comparison of integers of different signs: 'int' and 'std::__1::vector<(anonymous namespace)::HeapThunk *, std::__1::allocator<(anonymous namespace)::HeapThunk *> >::size_type' (aka 'unsigned long') [-Wsign-compare]
              for (int i = idx; i < elements.size(); ++i) {
                                ~ ^ ~~~~~~~~~~~~~~~
  core/vm.cpp:1577:33: warning: comparison of integers of different signs: 'int' and 'std::__1::vector<(anonymous namespace)::HeapThunk *, std::__1::allocator<(anonymous namespace)::HeapThunk *> >::size_type' (aka 'unsigned long') [-Wsign-compare]
              for (int i = idx; i < elements.size(); ++i) {
                                ~ ^ ~~~~~~~~~~~~~~~
  7 warnings generated.
  c++ -c -g -O3 -Wall -Wextra -Woverloaded-virtual -pedantic -std=c++0x -fPIC -Iinclude -Ithird_party/md5 -Ithird_party/json third_party/md5/md5.cpp -o third_party/md5/md5.o
  building '_jsonnet' extension
  creating build
  creating build/temp.macosx-10.7-x86_64-3.6
  creating build/temp.macosx-10.7-x86_64-3.6/python
  gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/anaconda3/envs/allennlp/include -arch x86_64 -I/usr/local/anaconda3/envs/allennlp/include -arch x86_64 -Iinclude -Ithird_party/md5 -Ithird_party/json -I/usr/local/anaconda3/envs/allennlp/include/python3.6m -c python/_jsonnet.c -o build/temp.macosx-10.7-x86_64-3.6/python/_jsonnet.o
  python/_jsonnet.c:147:19: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned long') [-Wsign-compare]
      for (i = 0; i < ctx->argc; ++i) {
                  ~ ^ ~~~~~~~~~
  1 warning generated.
  creating build/lib.macosx-10.7-x86_64-3.6
  g++ -bundle -undefined dynamic_lookup -L/usr/local/anaconda3/envs/allennlp/lib -L/usr/local/anaconda3/envs/allennlp/lib -arch x86_64 build/temp.macosx-10.7-x86_64-3.6/python/_jsonnet.o core/desugarer.o core/formatter.o core/libjsonnet.o core/lexer.o core/parser.o core/pass.o core/static_analysis.o core/string_utils.o core/vm.o third_party/md5/md5.o -L/usr/local/anaconda3/envs/allennlp/lib -o build/lib.macosx-10.7-x86_64-3.6/_jsonnet.cpython-36m-darwin.so
  clang: warning: libstdc++ is deprecated; move to libc++ with a minimum deployment target of OS X 10.9 [-Wdeprecated]
  ld: library not found for -lstdc++
  clang: error: linker command failed with exit code 1 (use -v to see invocation)
  error: command 'g++' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for jsonnet
  Running setup.py clean for jsonnet
Failed to build jsonnet
Installing collected packages: jsonnet, allennlp
  Running setup.py install for jsonnet ... error
    ERROR: Complete output from command /usr/local/anaconda3/envs/allennlp/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-install-5igclfl8/jsonnet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-record-o4j69o6d/install-record.txt --single-version-externally-managed --compile --user --prefix=:
    ERROR: running install
    running build
    running build_ext
    make: `core/desugarer.o' is up to date.
    make: `core/formatter.o' is up to date.
    make: `core/libjsonnet.o' is up to date.
    make: `core/lexer.o' is up to date.
    make: `core/parser.o' is up to date.
    make: `core/pass.o' is up to date.
    make: `core/static_analysis.o' is up to date.
    make: `core/string_utils.o' is up to date.
    make: `core/vm.o' is up to date.
    make: `third_party/md5/md5.o' is up to date.
    building '_jsonnet' extension
    creating build
    creating build/temp.macosx-10.7-x86_64-3.6
    creating build/temp.macosx-10.7-x86_64-3.6/python
    gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/usr/local/anaconda3/envs/allennlp/include -arch x86_64 -I/usr/local/anaconda3/envs/allennlp/include -arch x86_64 -Iinclude -Ithird_party/md5 -Ithird_party/json -I/usr/local/anaconda3/envs/allennlp/include/python3.6m -c python/_jsonnet.c -o build/temp.macosx-10.7-x86_64-3.6/python/_jsonnet.o
    python/_jsonnet.c:147:19: warning: comparison of integers of different signs: 'int' and 'const size_t' (aka 'const unsigned long') [-Wsign-compare]
        for (i = 0; i < ctx->argc; ++i) {
                    ~ ^ ~~~~~~~~~
    1 warning generated.
    creating build/lib.macosx-10.7-x86_64-3.6
    g++ -bundle -undefined dynamic_lookup -L/usr/local/anaconda3/envs/allennlp/lib -L/usr/local/anaconda3/envs/allennlp/lib -arch x86_64 build/temp.macosx-10.7-x86_64-3.6/python/_jsonnet.o core/desugarer.o core/formatter.o core/libjsonnet.o core/lexer.o core/parser.o core/pass.o core/static_analysis.o core/string_utils.o core/vm.o third_party/md5/md5.o -L/usr/local/anaconda3/envs/allennlp/lib -o build/lib.macosx-10.7-x86_64-3.6/_jsonnet.cpython-36m-darwin.so
    clang: warning: libstdc++ is deprecated; move to libc++ with a minimum deployment target of OS X 10.9 [-Wdeprecated]
    ld: library not found for -lstdc++
    clang: error: linker command failed with exit code 1 (use -v to see invocation)
    error: command 'g++' failed with exit status 1
    ----------------------------------------
ERROR: Command "/usr/local/anaconda3/envs/allennlp/bin/python -u -c 'import setuptools, tokenize;__file__='"'"'/private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-install-5igclfl8/jsonnet/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-record-o4j69o6d/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /private/var/folders/5z/pnhclkxj3fbd1gsyrr656m2w0000gn/T/pip-install-5igclfl8/jsonnet/

The text was updated successfully, but these errors were encountered:

rahular · 2019-04-30T18:47:27Z

Hi @whxf I am facing the same issue. How did you resolve it?

joelgrus · 2019-04-30T19:33:13Z

different solutions work for different people, hopefully one of these works for you:

#1938
google/jsonnet#570
google/jsonnet#573

whxf · 2019-05-01T03:51:19Z

@rahular I finally install it in system python env, not in anaconda env. But I didn't understand why it can work out of anaconda? What's the difference between them QAQ

whxf · 2019-05-01T04:02:33Z

@joelgrus Thanks a lot !!!!

yaceben · 2019-06-24T16:28:08Z

@whxf to install in anaconda env, the best solution I found was to rename Anaconda's ld linker in
anaconda/envs/env_name/compiler_compat/ldto ld.old or whatever. It seems to be causing more problems than it solves, so I usually leave it renamed to make sure that anaconda uses system global ld.

Cheers

whxf · 2019-06-25T07:16:02Z

@yaceben Thanks for answering, but the problem seems caused by clang. Now I've installed allennlp in anaconda. I solved the problem following stack overflow

ignacioct · 2021-01-15T18:51:16Z

For anyone with this problem in MacOS 11.1 Big Sur, one solution that worked for me with Mojave and stills works (I re-encountered this same problem) is the following:

Install Command Line Tools
export MACOSX_DEPLOYMENT_TARGET=11.1 as @pedrocolon93 pointed out (or whichever version of the CLT is out).
conda install jsonnet -c conda-forge as @dcfidalgo pointed out here.

Then I could pass that point in the installation.

DTKeysight · 2021-01-19T19:49:33Z

I get the following error when running conda install on a Windows virtual machine:

conda install jsonnet -c conda-forge
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - jsonnet

Current channels:

  - https://conda.anaconda.org/conda-forge/win-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/win-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/win-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/msys2/win-64
  - https://repo.anaconda.com/pkgs/msys2/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

ignacioct · 2021-01-19T21:20:53Z

I get the following error when running conda install on a Windows virtual machine:

conda install jsonnet -c conda-forge
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - jsonnet

Current channels:

  - https://conda.anaconda.org/conda-forge/win-64
  - https://conda.anaconda.org/conda-forge/noarch
  - https://repo.anaconda.com/pkgs/main/win-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/win-64
  - https://repo.anaconda.com/pkgs/r/noarch
  - https://repo.anaconda.com/pkgs/msys2/win-64
  - https://repo.anaconda.com/pkgs/msys2/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

This thread refers to an error of the C++ compiler of MacOS. Maybe you should create a separate thread for that error to address it in an isolated way.

whxf closed this as completed Apr 30, 2019

dwadden mentioned this issue Dec 3, 2019

./models/scierc/model.tar.gz not found dwadden/dygiepp#5

Closed

dwadden mentioned this issue May 24, 2020

Failed building wheel for jsonnet dwadden/dygiepp#16

Closed

butoialexandra mentioned this issue Jun 18, 2020

AllenNLP install failing on jsonnet #4376

Closed

10 tasks

dwadden mentioned this issue Sep 17, 2020

no module named 'torch__.C' dwadden/dygiepp#42

Closed

davidberenstein1957 mentioned this issue Sep 24, 2022

crosslingual_coreference is not installing on VM , jsonnet is the package giving the error davidberenstein1957/crosslingual-coreference#8

Closed

larkinbb mentioned this issue Jan 8, 2024

Unable to install jsonnet in Google Colab notebook: failed building wheel google/jsonnet#1122

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Install allennlp failed with jsonnet build error #2779

Install allennlp failed with jsonnet build error #2779

whxf commented Apr 30, 2019

rahular commented Apr 30, 2019

joelgrus commented Apr 30, 2019

whxf commented May 1, 2019 •

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whxf commented May 1, 2019

yaceben commented Jun 24, 2019

whxf commented Jun 25, 2019

ignacioct commented Jan 15, 2021

DTKeysight commented Jan 19, 2021 •

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ignacioct commented Jan 19, 2021

Install allennlp failed with jsonnet build error #2779

Install allennlp failed with jsonnet build error #2779

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whxf commented Apr 30, 2019

rahular commented Apr 30, 2019

joelgrus commented Apr 30, 2019

whxf commented May 1, 2019 • edited Loading

whxf commented May 1, 2019

yaceben commented Jun 24, 2019

whxf commented Jun 25, 2019

ignacioct commented Jan 15, 2021

DTKeysight commented Jan 19, 2021 • edited Loading

ignacioct commented Jan 19, 2021

whxf commented May 1, 2019 •

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DTKeysight commented Jan 19, 2021 •

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