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Error report from one of the student at Dynamic Brain Workshop
FYI. i'm getting an error when i try to pull down this experiment.
pdf, pd_info = mcc.get_projection_density(278181912)
ValueError Traceback (most recent call last) in () ----> 1 pdf, pd_info = mcc.get_projection_density(cre_ids[i])
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/allensdk/core/mouse_connectivity_cache.pyc in get_projection_density(self, experiment_id, file_name) 176 file_name, experiment_id, self.resolution) 177 --> 178 return nrrd.read(file_name) 179 180 def get_injection_density(self, experiment_id, file_name=None):
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/nrrd.pyc in read(filename) 390 with open(filename,'rb') as filehandle: 391 header = read_header(filehandle) --> 392 data = read_data(header, filehandle, filename) 393 return (data, header) 394
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/nrrd.pyc in read_data(fields, filehandle, filename, seek_past_header) 280 decompressed_data += decompobj.decompress(chunk) 281 # byteskip applies to the decompressed byte stream --> 282 data = np.fromstring(decompressed_data[byteskip:], dtype) 283
The text was updated successfully, but these errors were encountered:
This was due to a partial file download. This is being tracked separately in issue 28.
Sorry, something went wrong.
Merge pull request #23 in INF/allensdk from ABS-24 to dev
f45e6d7
* commit '60121c5aae995d9ae344e0081e875c43607d58da': temporarily disabling json test until better replacement test found
tfliss
No branches or pull requests
Error report from one of the student at Dynamic Brain Workshop
Student reports that script work for all other experiment except 278181912
FYI. i'm getting an error when i try to pull down this experiment.
pdf, pd_info = mcc.get_projection_density(278181912)
ValueError Traceback (most recent call last)
in ()
----> 1 pdf, pd_info = mcc.get_projection_density(cre_ids[i])
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/allensdk/core/mouse_connectivity_cache.pyc in get_projection_density(self, experiment_id, file_name)
176 file_name, experiment_id, self.resolution)
177
--> 178 return nrrd.read(file_name)
179
180 def get_injection_density(self, experiment_id, file_name=None):
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/nrrd.pyc in read(filename)
390 with open(filename,'rb') as filehandle:
391 header = read_header(filehandle)
--> 392 data = read_data(header, filehandle, filename)
393 return (data, header)
394
/Users/evadyer/anaconda/envs/py27/lib/python2.7/site-packages/nrrd.pyc in read_data(fields, filehandle, filename, seek_past_header)
280 decompressed_data += decompobj.decompress(chunk)
281 # byteskip applies to the decompressed byte stream
--> 282 data = np.fromstring(decompressed_data[byteskip:], dtype)
283
The text was updated successfully, but these errors were encountered: