SeqNado Pipeline

Pipeline based on snakemake to process ChIP-seq, ATAC-seq, RNA-seq and short read WGS data for SNP calling.

See the SeqNado documentation https://alsmith151.github.io/SeqNado/ for more information.

Name		Name	Last commit message	Last commit date
Latest commit History 196 Commits
.github		.github
docs		docs
seqnado		seqnado
tests		tests
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
README.md		README.md
conftest.py		conftest.py
environment.yml		environment.yml
environment_minimal.yml		environment_minimal.yml
install_seqnado.sh		install_seqnado.sh
mkdocs.yml		mkdocs.yml
pyproject.toml		pyproject.toml
seqnado_dev.yml		seqnado_dev.yml
seqnado_logo.jpeg		seqnado_logo.jpeg
seqnado_test.tar.gz		seqnado_test.tar.gz
setup.py		setup.py
testing.yml		testing.yml

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