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I have the same problem. As a temporary fix I suggest you "manually" adjust the axes size like this before exporting, in order to have more white space at the bottom:
ax.Position =ax.Position.* [11.510.9]; % <- where ax is the handle of the bottom axes
Adjust the proportions as you wish, it usually needs a few tries but after that it works.
Either with or without the '-nocrop' option, my x axis labels are getting cut off on some plots.
baseW.pdf
Not sure why, they are perfectly visible on the figure window:
Otherwise, export_fig is perfect. Any ideas? This is my command:
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