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predictor.html
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predictor.html
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<body>
<main>
<article id="content">
<header>
<h1 class="title">Module <code>ktrain.tabular.predictor</code></h1>
</header>
<section id="section-intro">
<details class="source">
<summary>
<span>Expand source code</span>
</summary>
<pre><code class="python">from .. import utils as U
from ..imports import *
from ..predictor import Predictor
from .preprocessor import TabularPreprocessor
class TabularPredictor(Predictor):
"""
```
predictions for tabular data
```
"""
def __init__(self, model, preproc, batch_size=U.DEFAULT_BS):
if not isinstance(model, keras.Model):
raise ValueError("model must be of instance keras.Model")
if (
not isinstance(preproc, TabularPreprocessor)
and type(preproc).__name__ != "TabularPreprocessor"
):
raise ValueError("preproc must be a TabularPreprocessor object")
self.model = model
self.preproc = preproc
self.c = self.preproc.get_classes()
self.batch_size = batch_size
def get_classes(self):
return self.c
def predict(self, df, return_proba=False):
"""
```
Makes predictions for a test dataframe
Args:
df(pd.DataFrame): a pandas DataFrame in same format as DataFrame used for training model
return_proba(bool): If True, return probabilities instead of predicted class labels
```
"""
if not isinstance(df, pd.DataFrame):
raise ValueError("df must be a pd.DataFrame")
df = df.copy()
classification, multilabel = U.is_classifier(self.model)
# get predictions
tseq = self.preproc.preprocess_test(df, verbose=0)
tseq.batch_size = self.batch_size
preds = self.model.predict(tseq)
result = (
preds
if return_proba or multilabel or not self.c
else [self.c[np.argmax(pred)] for pred in preds]
)
if multilabel and not return_proba:
result = [list(zip(self.c, r)) for r in result]
return result
def _predict_shap(self, X):
n_cats = len(self.preproc.cat_names)
n_conts = len(self.preproc.cont_names)
# reformat for model
batch_x = [X[:, i : i + 1] for i in range(n_cats)] + [X[:, -n_conts:]]
result = self.model.predict(batch_x)
return result
def explain(
self,
test_df,
row_index=None,
row_num=None,
class_id=None,
background_size=50,
nsamples=500,
):
"""
```
Explain the prediction of an example using SHAP.
Args:
df(pd.DataFrame): a pd.DataFrame of test data is same format as original training data DataFrame
The DataFrame does NOT need to contain all the original label columns
(e.g., the Survived column in Kaggle's Titatnic dataset) but MUST contain
all the original predictor columns (e.g., un-normalized numerical variables, categorical
variables as strings).
row_index(int): index of row in DataFrame to explain (e.g., PassengerID in Titanic dataset).
mutually-exclusive with row_id
row_num(int): raw row number in DataFrame to explain (i.e., 0=first row, 1=second rows, etc.)
mutually-exclusive with row_index
class_id(int): Only required for classification
background_size(int): size of background data (SHAP parameter)
nsamples(int): number of samples (SHAP parameter)
```
"""
try:
import shap
except ImportError:
msg = (
"TabularPredictor.explain requires shap library. Please install with: pip install shap. "
+ "Conda users should use this command instead: conda install -c conda-forge shap"
)
warnings.warn(msg)
return
classification, multilabel = U.is_classifier(self.model)
if classification and class_id is None:
raise ValueError(
"For classification models, please supply the class_id of the class you would like to explain."
+ "It should be an index into the list returned by predictor.get_classes()."
)
f = self._predict_shap
# prune dataframe
df_display = test_df.copy()
df_display = df_display[self.preproc.pc]
# add synthetic labels
for lab in self.preproc.lc:
df_display[lab] = np.zeros(df_display.shape[0], dtype=int)
# convert DataFrame to TabularDataset with processed/normalized independent variables
tabseq = self.preproc.preprocess_test(df_display, verbose=0)
tabseq.batch_size = df_display.shape[0]
df = pd.DataFrame(
data=np.concatenate(tabseq[0][0], axis=1),
columns=tabseq.cat_columns + tabseq.cont_columns,
index=df_display.index,
)
# add new auto-engineered feature columns
for col in [self.preproc.na_names + self.preproc.date_names]:
df_display[col] = df[col]
# sort display df correctly
df_display = df_display[tabseq.cat_columns + tabseq.cont_columns]
# select row
if row_num is not None and row_index is not None:
raise ValueError(
"row_num and row_index are mutually exclusive with eachother."
)
if row_index is not None:
df_row = df[df.index.isin([row_index])].iloc[0, :]
df_display_row = df_display[df_display.index.isin([row_index])].iloc[0, :]
r_key = "row_index" if df.index.name is None else df.index.name
r_val = row_index
elif row_num is not None:
df_row = df.iloc[row_num, :]
df_display_row = df_display.iloc[row_num, :]
r_key = "row_num"
r_val = row_num
# print(df_row)
# print(df_display_row)
# shap
explainer = shap.KernelExplainer(f, df.iloc[:background_size, :])
shap_values = explainer.shap_values(df_row, nsamples=nsamples, l1_reg="aic")
expected_value = explainer.expected_value
if not np.issubdtype(type(explainer.expected_value), np.floating):
expected_value = explainer.expected_value[
0 if class_id is None else class_id
]
if type(shap_values) == list:
shap_values = shap_values[0 if class_id is None else class_id]
if classification:
print(
"Explanation for class = %s (%s=%s): "
% (self.get_classes()[class_id], r_key, r_val)
)
plt.show(
shap.force_plot(
expected_value, shap_values, df_display_row, matplotlib=True
)
)</code></pre>
</details>
</section>
<section>
</section>
<section>
</section>
<section>
</section>
<section>
<h2 class="section-title" id="header-classes">Classes</h2>
<dl>
<dt id="ktrain.tabular.predictor.TabularPredictor"><code class="flex name class">
<span>class <span class="ident">TabularPredictor</span></span>
<span>(</span><span>model, preproc, batch_size=32)</span>
</code></dt>
<dd>
<div class="desc"><pre><code>predictions for tabular data
</code></pre></div>
<details class="source">
<summary>
<span>Expand source code</span>
</summary>
<pre><code class="python">class TabularPredictor(Predictor):
"""
```
predictions for tabular data
```
"""
def __init__(self, model, preproc, batch_size=U.DEFAULT_BS):
if not isinstance(model, keras.Model):
raise ValueError("model must be of instance keras.Model")
if (
not isinstance(preproc, TabularPreprocessor)
and type(preproc).__name__ != "TabularPreprocessor"
):
raise ValueError("preproc must be a TabularPreprocessor object")
self.model = model
self.preproc = preproc
self.c = self.preproc.get_classes()
self.batch_size = batch_size
def get_classes(self):
return self.c
def predict(self, df, return_proba=False):
"""
```
Makes predictions for a test dataframe
Args:
df(pd.DataFrame): a pandas DataFrame in same format as DataFrame used for training model
return_proba(bool): If True, return probabilities instead of predicted class labels
```
"""
if not isinstance(df, pd.DataFrame):
raise ValueError("df must be a pd.DataFrame")
df = df.copy()
classification, multilabel = U.is_classifier(self.model)
# get predictions
tseq = self.preproc.preprocess_test(df, verbose=0)
tseq.batch_size = self.batch_size
preds = self.model.predict(tseq)
result = (
preds
if return_proba or multilabel or not self.c
else [self.c[np.argmax(pred)] for pred in preds]
)
if multilabel and not return_proba:
result = [list(zip(self.c, r)) for r in result]
return result
def _predict_shap(self, X):
n_cats = len(self.preproc.cat_names)
n_conts = len(self.preproc.cont_names)
# reformat for model
batch_x = [X[:, i : i + 1] for i in range(n_cats)] + [X[:, -n_conts:]]
result = self.model.predict(batch_x)
return result
def explain(
self,
test_df,
row_index=None,
row_num=None,
class_id=None,
background_size=50,
nsamples=500,
):
"""
```
Explain the prediction of an example using SHAP.
Args:
df(pd.DataFrame): a pd.DataFrame of test data is same format as original training data DataFrame
The DataFrame does NOT need to contain all the original label columns
(e.g., the Survived column in Kaggle's Titatnic dataset) but MUST contain
all the original predictor columns (e.g., un-normalized numerical variables, categorical
variables as strings).
row_index(int): index of row in DataFrame to explain (e.g., PassengerID in Titanic dataset).
mutually-exclusive with row_id
row_num(int): raw row number in DataFrame to explain (i.e., 0=first row, 1=second rows, etc.)
mutually-exclusive with row_index
class_id(int): Only required for classification
background_size(int): size of background data (SHAP parameter)
nsamples(int): number of samples (SHAP parameter)
```
"""
try:
import shap
except ImportError:
msg = (
"TabularPredictor.explain requires shap library. Please install with: pip install shap. "
+ "Conda users should use this command instead: conda install -c conda-forge shap"
)
warnings.warn(msg)
return
classification, multilabel = U.is_classifier(self.model)
if classification and class_id is None:
raise ValueError(
"For classification models, please supply the class_id of the class you would like to explain."
+ "It should be an index into the list returned by predictor.get_classes()."
)
f = self._predict_shap
# prune dataframe
df_display = test_df.copy()
df_display = df_display[self.preproc.pc]
# add synthetic labels
for lab in self.preproc.lc:
df_display[lab] = np.zeros(df_display.shape[0], dtype=int)
# convert DataFrame to TabularDataset with processed/normalized independent variables
tabseq = self.preproc.preprocess_test(df_display, verbose=0)
tabseq.batch_size = df_display.shape[0]
df = pd.DataFrame(
data=np.concatenate(tabseq[0][0], axis=1),
columns=tabseq.cat_columns + tabseq.cont_columns,
index=df_display.index,
)
# add new auto-engineered feature columns
for col in [self.preproc.na_names + self.preproc.date_names]:
df_display[col] = df[col]
# sort display df correctly
df_display = df_display[tabseq.cat_columns + tabseq.cont_columns]
# select row
if row_num is not None and row_index is not None:
raise ValueError(
"row_num and row_index are mutually exclusive with eachother."
)
if row_index is not None:
df_row = df[df.index.isin([row_index])].iloc[0, :]
df_display_row = df_display[df_display.index.isin([row_index])].iloc[0, :]
r_key = "row_index" if df.index.name is None else df.index.name
r_val = row_index
elif row_num is not None:
df_row = df.iloc[row_num, :]
df_display_row = df_display.iloc[row_num, :]
r_key = "row_num"
r_val = row_num
# print(df_row)
# print(df_display_row)
# shap
explainer = shap.KernelExplainer(f, df.iloc[:background_size, :])
shap_values = explainer.shap_values(df_row, nsamples=nsamples, l1_reg="aic")
expected_value = explainer.expected_value
if not np.issubdtype(type(explainer.expected_value), np.floating):
expected_value = explainer.expected_value[
0 if class_id is None else class_id
]
if type(shap_values) == list:
shap_values = shap_values[0 if class_id is None else class_id]
if classification:
print(
"Explanation for class = %s (%s=%s): "
% (self.get_classes()[class_id], r_key, r_val)
)
plt.show(
shap.force_plot(
expected_value, shap_values, df_display_row, matplotlib=True
)
)</code></pre>
</details>
<h3>Ancestors</h3>
<ul class="hlist">
<li><a title="ktrain.predictor.Predictor" href="../predictor.html#ktrain.predictor.Predictor">Predictor</a></li>
<li>abc.ABC</li>
</ul>
<h3>Methods</h3>
<dl>
<dt id="ktrain.tabular.predictor.TabularPredictor.explain"><code class="name flex">
<span>def <span class="ident">explain</span></span>(<span>self, test_df, row_index=None, row_num=None, class_id=None, background_size=50, nsamples=500)</span>
</code></dt>
<dd>
<div class="desc"><pre><code>Explain the prediction of an example using SHAP.
Args:
df(pd.DataFrame): a pd.DataFrame of test data is same format as original training data DataFrame
The DataFrame does NOT need to contain all the original label columns
(e.g., the Survived column in Kaggle's Titatnic dataset) but MUST contain
all the original predictor columns (e.g., un-normalized numerical variables, categorical
variables as strings).
row_index(int): index of row in DataFrame to explain (e.g., PassengerID in Titanic dataset).
mutually-exclusive with row_id
row_num(int): raw row number in DataFrame to explain (i.e., 0=first row, 1=second rows, etc.)
mutually-exclusive with row_index
class_id(int): Only required for classification
background_size(int): size of background data (SHAP parameter)
nsamples(int): number of samples (SHAP parameter)
</code></pre></div>
<details class="source">
<summary>
<span>Expand source code</span>
</summary>
<pre><code class="python">def explain(
self,
test_df,
row_index=None,
row_num=None,
class_id=None,
background_size=50,
nsamples=500,
):
"""
```
Explain the prediction of an example using SHAP.
Args:
df(pd.DataFrame): a pd.DataFrame of test data is same format as original training data DataFrame
The DataFrame does NOT need to contain all the original label columns
(e.g., the Survived column in Kaggle's Titatnic dataset) but MUST contain
all the original predictor columns (e.g., un-normalized numerical variables, categorical
variables as strings).
row_index(int): index of row in DataFrame to explain (e.g., PassengerID in Titanic dataset).
mutually-exclusive with row_id
row_num(int): raw row number in DataFrame to explain (i.e., 0=first row, 1=second rows, etc.)
mutually-exclusive with row_index
class_id(int): Only required for classification
background_size(int): size of background data (SHAP parameter)
nsamples(int): number of samples (SHAP parameter)
```
"""
try:
import shap
except ImportError:
msg = (
"TabularPredictor.explain requires shap library. Please install with: pip install shap. "
+ "Conda users should use this command instead: conda install -c conda-forge shap"
)
warnings.warn(msg)
return
classification, multilabel = U.is_classifier(self.model)
if classification and class_id is None:
raise ValueError(
"For classification models, please supply the class_id of the class you would like to explain."
+ "It should be an index into the list returned by predictor.get_classes()."
)
f = self._predict_shap
# prune dataframe
df_display = test_df.copy()
df_display = df_display[self.preproc.pc]
# add synthetic labels
for lab in self.preproc.lc:
df_display[lab] = np.zeros(df_display.shape[0], dtype=int)
# convert DataFrame to TabularDataset with processed/normalized independent variables
tabseq = self.preproc.preprocess_test(df_display, verbose=0)
tabseq.batch_size = df_display.shape[0]
df = pd.DataFrame(
data=np.concatenate(tabseq[0][0], axis=1),
columns=tabseq.cat_columns + tabseq.cont_columns,
index=df_display.index,
)
# add new auto-engineered feature columns
for col in [self.preproc.na_names + self.preproc.date_names]:
df_display[col] = df[col]
# sort display df correctly
df_display = df_display[tabseq.cat_columns + tabseq.cont_columns]
# select row
if row_num is not None and row_index is not None:
raise ValueError(
"row_num and row_index are mutually exclusive with eachother."
)
if row_index is not None:
df_row = df[df.index.isin([row_index])].iloc[0, :]
df_display_row = df_display[df_display.index.isin([row_index])].iloc[0, :]
r_key = "row_index" if df.index.name is None else df.index.name
r_val = row_index
elif row_num is not None:
df_row = df.iloc[row_num, :]
df_display_row = df_display.iloc[row_num, :]
r_key = "row_num"
r_val = row_num
# print(df_row)
# print(df_display_row)
# shap
explainer = shap.KernelExplainer(f, df.iloc[:background_size, :])
shap_values = explainer.shap_values(df_row, nsamples=nsamples, l1_reg="aic")
expected_value = explainer.expected_value
if not np.issubdtype(type(explainer.expected_value), np.floating):
expected_value = explainer.expected_value[
0 if class_id is None else class_id
]
if type(shap_values) == list:
shap_values = shap_values[0 if class_id is None else class_id]
if classification:
print(
"Explanation for class = %s (%s=%s): "
% (self.get_classes()[class_id], r_key, r_val)
)
plt.show(
shap.force_plot(
expected_value, shap_values, df_display_row, matplotlib=True
)
)</code></pre>
</details>
</dd>
<dt id="ktrain.tabular.predictor.TabularPredictor.get_classes"><code class="name flex">
<span>def <span class="ident">get_classes</span></span>(<span>self)</span>
</code></dt>
<dd>
<div class="desc"></div>
<details class="source">
<summary>
<span>Expand source code</span>
</summary>
<pre><code class="python">def get_classes(self):
return self.c</code></pre>
</details>
</dd>
<dt id="ktrain.tabular.predictor.TabularPredictor.predict"><code class="name flex">
<span>def <span class="ident">predict</span></span>(<span>self, df, return_proba=False)</span>
</code></dt>
<dd>
<div class="desc"><pre><code>Makes predictions for a test dataframe
Args:
df(pd.DataFrame): a pandas DataFrame in same format as DataFrame used for training model
return_proba(bool): If True, return probabilities instead of predicted class labels
</code></pre></div>
<details class="source">
<summary>
<span>Expand source code</span>
</summary>
<pre><code class="python">def predict(self, df, return_proba=False):
"""
```
Makes predictions for a test dataframe
Args:
df(pd.DataFrame): a pandas DataFrame in same format as DataFrame used for training model
return_proba(bool): If True, return probabilities instead of predicted class labels
```
"""
if not isinstance(df, pd.DataFrame):
raise ValueError("df must be a pd.DataFrame")
df = df.copy()
classification, multilabel = U.is_classifier(self.model)
# get predictions
tseq = self.preproc.preprocess_test(df, verbose=0)
tseq.batch_size = self.batch_size
preds = self.model.predict(tseq)
result = (
preds
if return_proba or multilabel or not self.c
else [self.c[np.argmax(pred)] for pred in preds]
)
if multilabel and not return_proba:
result = [list(zip(self.c, r)) for r in result]
return result</code></pre>
</details>
</dd>
</dl>
<h3>Inherited members</h3>
<ul class="hlist">
<li><code><b><a title="ktrain.predictor.Predictor" href="../predictor.html#ktrain.predictor.Predictor">Predictor</a></b></code>:
<ul class="hlist">
<li><code><a title="ktrain.predictor.Predictor.create_onnx_session" href="../predictor.html#ktrain.predictor.Predictor.create_onnx_session">create_onnx_session</a></code></li>
<li><code><a title="ktrain.predictor.Predictor.export_model_to_onnx" href="../predictor.html#ktrain.predictor.Predictor.export_model_to_onnx">export_model_to_onnx</a></code></li>
<li><code><a title="ktrain.predictor.Predictor.export_model_to_tflite" href="../predictor.html#ktrain.predictor.Predictor.export_model_to_tflite">export_model_to_tflite</a></code></li>
<li><code><a title="ktrain.predictor.Predictor.save" href="../predictor.html#ktrain.predictor.Predictor.save">save</a></code></li>
</ul>
</li>
</ul>
</dd>
</dl>
</section>
</article>
<nav id="sidebar">
<h1>Index</h1>
<div class="toc">
<ul></ul>
</div>
<ul id="index">
<li><h3>Super-module</h3>
<ul>
<li><code><a title="ktrain.tabular" href="index.html">ktrain.tabular</a></code></li>
</ul>
</li>
<li><h3><a href="#header-classes">Classes</a></h3>
<ul>
<li>
<h4><code><a title="ktrain.tabular.predictor.TabularPredictor" href="#ktrain.tabular.predictor.TabularPredictor">TabularPredictor</a></code></h4>
<ul class="">
<li><code><a title="ktrain.tabular.predictor.TabularPredictor.explain" href="#ktrain.tabular.predictor.TabularPredictor.explain">explain</a></code></li>
<li><code><a title="ktrain.tabular.predictor.TabularPredictor.get_classes" href="#ktrain.tabular.predictor.TabularPredictor.get_classes">get_classes</a></code></li>
<li><code><a title="ktrain.tabular.predictor.TabularPredictor.predict" href="#ktrain.tabular.predictor.TabularPredictor.predict">predict</a></code></li>
</ul>
</li>
</ul>
</li>
</ul>
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