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Calendar 📆

Date Topics Materials
Week 1
October 9
  • Join the Sloth Squad!
  • R set-up
  • Questions for Dr. Blair
R Set-up - slides
Dr. Blair's website
Dr. Blair - Scientist at Work
October 11
  • Meet Dr. Mary Blair!
  • Project Overview
Questions for Dr. Blair
Project Overview - slides
Week 2
October 16
  • Digging into R+GitHub 🍴
  • Introduction to R
Forking in GitHub and RStudio
Happy Git with R
Introduction to R - RMarkdown
October 18
  • Going outside! - GPS exploration
  • Syncing a fork
  • Introduction to spatial data in R
GPS collection instructions
GPS R Markdown
Week 3
October 23
  • Syncing a fork - review
  • GPS in R continued
GitHub Help: syncing a fork
GPS R Markdown
October 25
  • Hall of Biodiversity scavenger hunt
  • What is GBIF?
GBIF website
Week 4
October 30
🎃Halloween Eve🍫
  • UFO(+R) 👽
UFO R Markdown
November 1
  • ggplot2 tutorial
  • UFO(+R) continued
  • spocc package
ggplot2 tutorial and tutorial notes
ggplot2 Cheatsheet
spocc package tutorial
Week 5
November 6
🇺🇸 Election Day 🇺🇸
No internship session today Code in politics (and life) - FiveThirtyEight
November 8
  • Finish spocc tutorial
  • Fast facts about sloths
Sloth slides
Week 6
November 13
  • Subsetting data
  • Lines and polygons - Introduction
Sloth data cleaning - part 1
Return to GPS
November 15
  • Lines and polygons (continued)
  • Questions for Julia Tejada
Sloth data cleaning - part 2
Questions for Julia Tejada
Week 7
November 20
  • Meet Julia Tejada!
  • Data cleaning workflow
Data cleaning script
November 22
🍗Thanksgiving🍁
No internship session today
Week 8
November 27
  • Data cleaning workflow (continued)
  • Presentation brainstorm
Presentation brainstorm
November 29
  • Louise is visiting!
  • Introduction to spatial thinning
  • spThin tutorial
Intro to spatial thinning -- slides
Sloth data cleaning - part 3
Week 9
December 4
  • Polygon overlaps
  • Wrap up spatial thinning
  • Code troubleshooting
Polygon overlap revisited
December 6
  • Code debugging 🐜
Code troubleshooting - slides
Week 10
December 11
  • Finish debugging
  • Work on presentations
SlothSquad Winter Presentation - Slides
Code summary by Ula
December 13
  • Community building
  • Work on presentations
Week 11
December 18
  • Work on presentations
December 20 Winter Presentations!
Winter Recess
December 24-January 1
Week 12
January 3
  • File path game
File path game instructions
Week 13
January 8
  • Git and goals!
  • Gift exchange 🎁
  • Introduction to rasters
  • raster package tutorial
  • What is WorldClim?
Intro to rasters - slides
raster tutorial
WorldClim website: Data format & Bioclimatic variables
January 10
  • WorldClim in R 🌎
  • Introduction to machine learning
WorldClim in R - RMarkdown
Intro to machine learning - slides
Week 14
January 15
  • Introduction to machine learning (continued)
  • Machine learning in the real world
Machine learning articles
January 17
  • Hello machine learning project - supervised learning
Iris machine learning project - slides
Hello machine learning! - RMarkdown
Week 15
January 22
  • Louise is visiting!
  • Supervised learning continued
  • Hello machine learning - unsupervised learning
Unsupervised learning - RMarkdown
January 24
  • Sloth skull machine learning - supervised learning 💀
Sloth skull project - slides
Sloth skull project - R script
Week 16
January 29
  • Types of supervised learning
  • Sloth skull machine learning - supervised learning (continued)
  • Questions for Alexandra Matos
Supervised learning algorithms - slides
Questions for Alexandra Matos
January 31 Internships canceled 🌡️
Week 17
February 5 No internship session today
February 7
  • Meet Alexandra Matos
  • Wrap up sloth skull machine learning
February 8 Hackathon! 🚀
February 9 Hackathon! ☀️
Week 18
February 10 Hackathon! 🌕
February 12 No internship session today
February 14
😍Valentine's Day❤️
  • Wrap up sloth skull machine learning
  • An R Valentine 💌
  • Machine learning activity!
  • Questions for Allison Parrish
Machine learning activity worksheet
R Valentine RMarkdown
Questions for Allison Parrish
Mid-Winter Recess ❄️ February 18-22 ⛄
Week 19
February 26 Resume Workshop
February 28 HTML/CSS Workshop
Week 20
March 5
  • Meet Allison Parrish!
March 7
  • Maxent tutorial
  • Get occurrence data for Maxent modeling
Download Maxent
Maxent tutorial
Maxent notes (thank you, Ula!)
Maxent next steps - Slides
Week 21
March 12
  • Process environmental data
Create background regions - RMarkdown
March 14
  • Partition occurrence data
  • 🐒 🐀 March Mammal Madness! 🐏 🐅
Occurrence data partitioning - RMarkdown
MMM instructions
Week 22
March 19
  • GitHub branching
  • Prepare data for Maxent models
Branching in GitHub
Maxent modeling script
March 21
  • Louise is visiting!
  • Wrap up Maxent modeling script
Week 23
March 26
  • GitHub pull requests
  • Build and visualize Maxent models
  • Model selection
Git/GitHub workflows (slides 26-56)
ENMeval tutorial
March 28
  • Visualize Maxent models
  • Model selection
Maxent model selection tutorial
Week 24
April 2
  • Meet Tracey John!
  • Projecting in space
Tracey's website
April 4
  • Update Maxent modeling script
Updated modeling script
Week 25
April 9
  • How do we pick a model?
  • Updating Maxent model script
  • Questions for Peri Doerfler
Questions for Peri Doerfler
April 11
  • Meet Peri Doerfler!
  • At home: Future climate data ⏩
Back to the future - climate data
Week 26
April 16
  • Meet with Mary Blair!
  • Getting help with R
  • Finish updating Maxent model script
Debugging workflow
saveRDS() function example
April 18
  • Pull requests
  • Projecting forward in time
Cropping vs. masking
Pull request instructions
Projecting forward tutorial
Spring Recess 🌷 April 22-26 🌱
Week 27
April 30
  • Update Maxent modeling script
  • Response curves
  • Past climate data ⏪
  • Projecting backwards in time
List of projections to make
Response curves - Markdown
Turn back time - climate data
Projecting backwards instructions
May 2
  • Finishing touches on code
  • Save plots for presentations
List of figures for presentations
Week 28
May 7
  • Louise is visiting!
  • Work on list of figures
  • Come up with a title
  • Work on poster and/or 15-minute presentation
  • List of figures for presentations
    Text and figures for poster - Google Doc
    SlothSquad poster
    SlothSquad 15 minute presentation
    May 9 Presentation Skills / Improv Workshop
    Week 29
    May 14
  • Work on poster!
  • Talk about posters
  • Sample posters folder
    Poster session video
    SlothSquad 5 minute presentation
    May 16
  • Work on poster
  • Install and test Zoom
  • Text and figures for poster - Google Doc
    SlothSquad poster
    Zoom download
    Week 30
    May 21 [Cecina in D.C. for conference]
  • Work on poster
  • May 23
  • Edit abstract
    SRMP poster ready for printing! [6:30 pm]
  • Week 31
    May 28 Practice presentation!
    May 30
  • Final edits to presentations
  • Week 32
    June 4 No internship session today
    June 6 SRMP Colloquium, Poster, and 5-minute Presentation
    June 9 15-minute presentation
    🎓 Brown Scholar Intern Graduation! 🎉