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Mrtabolic-c was unsuccessful in producing All_gene_collections_mapped.depth.txt documents #181

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HAIS-st opened this issue Mar 13, 2024 · 0 comments

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@HAIS-st
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HAIS-st commented Mar 13, 2024

When running metabolic-c, I get the following error:
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/.bt2': No such file or directory
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/
.bt2': No such file or directory
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/.bam': No such file or directory
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/
.bam': No such file or directory
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/.bai': No such file or directory
rm: cannot remove '/home/zhangyunhui/shihai/result/SCS_003_5/metabolic/
.bai': No such file or directory
Here's my script:
perl /opt/software/METABOLIC/METABOLIC-C.pl -in-gn /home/zhangyunhui/shihai/result/${file_name}/assembly -r /home/zhangyunhui/shihai/result/${file_name}/pair.txt -o /home/zhangyunhui/shihai/result/${file_name}/metabolic -t 10

Attached is the log:
METABOLIC_log.log

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