master.tex

\documentclass[twoside,english, a4paper, 11pt]{uiofysmaster}
% \usepackage{biblatex}
\usepackage{float}
\usepackage{todonotes}
\usepackage{amssymb}
\usepackage[top=1.5in, bottom=1.5in, left=1in, right=1in]{geometry}

\author{Anders Hafreager}
\title{\uppercase{Flow of dilute gases in complex nanoporous media}}
\date{March 2014}

\input{preamble}
\input{customCommands}
\usepackage{mathrsfs}

% \usepackage{autocite}
\usepackage[]{biblatex}
\bibliography{Bibliography/master.bib}

\begin{document}

\maketitle
\clearpage

\begin{abstract}
\input{abstract}
\end{abstract}

\begin{acknowledgements}
  \input{acknowledgements}
\end{acknowledgements}

\tableofcontents
\clearpage
\listoffigures
\clearpage
\listoftables

\begin{chapter}{Introduction}
  \input{introduction/introduction}
\end{chapter}

\begin{chapter}{Theory of fluids}
  \label{chap:theory_of_fluids}
  \input{background/theoryoffluids}
  \input{background/gasdynamics}
\end{chapter}

\begin{part}{Direct Simulation Monte Carlo}
\label{part:dsmc}
\begin{chapter}{Kinetic theory}
  \label{chap:kinetic_theory}
  \input{kinetic_theory/introduction}
  \input{kinetic_theory/boltzmann_equation}
  \input{kinetic_theory/maxwell_boltzmann}
  \input{kinetic_theory/mean_free_path_and_time}
\end{chapter}

\begin{chapter}{Direct Simulation Monte Carlo}
  \label{chap:dsmc}
  \input{DSMC/introduction}
  \input{DSMC/model}
  \input{DSMC/surface_interactions}
  \input{DSMC/model_collisions}
  \input{DSMC/physicalproperties}
  \input{DSMC/pressure_new}
  \input{DSMC/stability}
  \input{DSMC/steadystate}
\end{chapter}
\begin{chapter}{Implementation}
\label{chap:dsmc_implementation}
  \input{DSMC/implementation}
  \input{DSMC/geometry}
  \input{DSMC/initialization}
  \input{DSMC/timestep}
  \input{DSMC/parallelization}
\end{chapter}
\begin{chapter}{Results}
  \label{chap:dsmc_results}
  \input{DSMC/validation}
  \input{DSMC/results}
\end{chapter}
\end{part}

\begin{part}{Molecular Dynamics}
  \label{part:md}
  \begin{chapter}{Theory}
  \label{chap:md}
  \input{MD/introduction}
  \input{MD/model}
  \input{MD/forces}
  \input{MD/timeintegration}
  \input{MD/physicalproperties}
  \end{chapter}

  \begin{chapter}{Implementation}
  \label{chap:md_implementation}
    \input{MD/implementation}
    \input{MD/parallelization}
    \input{MD/initialization}
    \input{MD/timestep}
    \input{MD/geometry}
  \end{chapter}

  \begin{chapter}{Results}
  \label{chap:md_results}
    \input{MD/results}
  \end{chapter}  
\end{part}

\begin{part}{Visualization}
  \input{visualization}
  \begin{chapter}{OpenGL}
    \label{chap:opengl}
    \input{opengl/introduction}
    \input{opengl/vbo}
    \input{opengl/pipeline}
  \end{chapter}
  
  \begin{chapter}{Advanced particle visualizer}
    \label{chap:particle_visualizer}
    \input{visualization/introduction}
    \input{visualization/billboards}
    \input{visualization/marching_cubes}
    \input{visualization/gallery}
    %\input{visualization/oculus_rift}
  \end{chapter}
\end{part}

\begin{part}{Conclusion and discussion}
\begin{chapter}{Summary and conclusion}
\input{conclusion/conclusion}
\input{conclusion/discussion}
\input{conclusion/futurework2}
\end{chapter}
\end{part}
%---------------------------------------------------------------------------------------
% Appendices
%---------------------------------------------------------------------------------------
\begin{part}{Appendices}
\begin{appendices}
\input{appendices/knudsen_number_packed_spheres}
\input{appendices/liouvilletimeintegration}
\input{appendices/pressure}
\input{appendices/python_scripting}
\input{appendices/units}
\end{appendices}
\end{part}
%---------------------------------------------------------------------------------------
% Bibliography
%---------------------------------------------------------------------------------------
\printbibliography
\end{document}