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  1. google/deepvariant google/deepvariant Public

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python 3.1k 698

  2. dnanexus/dx-toolkit dnanexus/dx-toolkit Public

    DNAnexus platform client libraries

    Python 85 82

  3. dnanexus-archive/parliament2 dnanexus-archive/parliament2 Public archive

    Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

    Python 101 39