This book, Andy's Brain Book, is intended for both beginners and more advanced neuroimagers. We will start with basic fMRI analysis, with more advanced analyses being added later. It is the ReadTheDocs companion to Andy's Brain Blog.
If you are completely new to fMRI analysis, I recommend starting with the installation page <fsl_mac_install>.
installation/fsl_mac_install
unix/Unix_Intro unix/Unix_01_Navigation unix/Unix_02_CopyRemove unix/Unix_03_ReadingTextFiles unix/Unix_04_ShellsVariables
fMRI_Short_Course/fMRI_Intro fMRI_Short_Course/fMRI_01_DataDownload fMRI_Short_Course/fMRI_02_ExperimentalDesign fMRI_Short_Course/fMRI_03_LookingAtTheData fMRI_Short_Course/fMRI_04_Preprocessing fMRI_Short_Course/fMRI_05_1stLevelAnalysis fMRI_Short_Course/fMRI_06_Scripting fMRI_Short_Course/fMRI_07_2ndLevelAnalysis fMRI_Short_Course/fMRI_08_3rdLevelAnalysis fMRI_Short_Course/fMRI_09_ROIAnalysis fMRI_Short_Course/fMRI_10_Summary
Practicals/ROI_Analysis/Overview
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