run_proteomics_power.r

## number of cores to use on multicore machines
options(mc.cores=4)
options(boot.ncpus=4)
## parallel backend
options(boot.parallel="snow")

## location of MGSAT code
MGSAT_SRC = "~/work/mgsat"

source(paste(MGSAT_SRC,"dependencies.r",sep="/"),local=T)

## Uncomment next line to install packages needed by MGSAT (!!!comment it out
## in all subsequent runs once the packages have been installed!!!).
## Note: you should also pre-install Pandoc program from http://johnmacfarlane.net/pandoc/
## or using your OS package manager (if running on Linux)

#install_required_packages()

## loads dependency packages (which already must be installed)
load_required_packages()

## loads MGSAT code
source(paste(MGSAT_SRC,"report_pandoc.r",sep="/"),local=T)
source(paste(MGSAT_SRC,"power_and_tests.r",sep="/"),local=T)

## leave with try.debug=F for production runs
set_trace_options(try.debug=F)

#power.res = power.pieper.prostate.cancer.2014()
power.madupu.kidney_diabetes()
print(power.res)