discretization.rst

Discretization

Scripts that either discretize MD trajectories or that work with discretized trajectories.

Site contents

• Scripts that create discretized trajectories
• Scripts that process discretized trajectories
• Plot scripts

Scripts that create discretized trajectories

.. currentmodule:: scripts/discretization

.. autosummary::
    :toctree: _sphinx_autosummary_discretization
    :template: custom-module-template.rst
    :recursive:
    :nosignatures:

    discrete_pos

Scripts that process discretized trajectories

.. currentmodule:: scripts/discretization

.. autosummary::
    :toctree: _sphinx_autosummary_discretization
    :template: custom-module-template.rst
    :recursive:
    :nosignatures:

    back_jump_prob
    back_jump_prob_discrete
    kaplan_meier
    kaplan_meier_discrete
    state_lifetime
    state_lifetime_discrete

Plot scripts

.. currentmodule:: scripts/discretization

.. autosummary::
    :toctree: _sphinx_autosummary_discretization
    :template: custom-module-template.rst
    :recursive:
    :nosignatures:

    plot_discrete_hex_trj
    plot_discrete_pos_trj
    plot_state_lifetime
    plot_state_lifetime_discrete
    plot_trans_per_state_vs_time