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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="" xml:lang="">
<head>
<title>ReproHack</title>
<meta charset="utf-8" />
<meta name="author" content=" Anna Krystalli <span><i class="fab fa-twitter faa-float animated "></i>@annakrystalli</span>" />
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class: center, middle, inverse, title-slide
# ReproHack
## <img src='https://github.com/reprohack/reprohack-hq/raw/master/hex/reprohack.png' height=200px><br/>one-day reproducibility hackathons
### <br><br>Anna Krystalli <span><i class="fab fa-twitter faa-float animated "></i>@annakrystalli</span>
### rOpenSci Community Call 2019-07-30
---
layout: true
<div class="my-footer"><span>rOpenSci Community Call
&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;
&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;&emsp;
@annakrystalli <a href="https://twitter.com/annakrystalli"><i class="fab fa-twitter"></i> </a>
@annakrystalli <a href="https://github.com/annakrystalli"><i class="fab fa-github-alt"></i> </a>
</span></div>
---
# ReproHack History
#### OpenCon Satellite: Berlin, 2016
#### OpenCon Satellite: London, 2017
--
<br>
Inspired by Owen Petchey's [Reproducible Research in Ecology, Evolution, Behaviour, and Environmental Studies](https://github.com/opetchey/RREEBES) course,
- Reproduce published results from raw data
- Over a few months and a number of sessions
--
### **ReproHack mission: Reproduce paper in a day from code and data**
---
# SSI Fellowship
.pull-left[
]
--
.pull-right[
]
---
class: inverse, left, bottom
# .font_title[How does it work?]
***
---
# Call for papers
.pull-left[
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">✨Do you champion <a href="https://twitter.com/hashtag/reproducible?src=hash&amp;ref_src=twsrc%5Etfw">#reproducible</a> <a href="https://twitter.com/hashtag/research?src=hash&amp;ref_src=twsrc%5Etfw">#research</a>? <br>✨Do you have a reproducible paper with open code and data?<br><br>The <a href="https://twitter.com/SoftwareSaved?ref_src=twsrc%5Etfw">@SoftwareSaved</a> <a href="https://twitter.com/hashtag/ReproHack?src=hash&amp;ref_src=twsrc%5Etfw">#ReproHack</a> series needs you! 🚀<br><br>Help others learn &amp; engage with your work by submitting it to our 1-day Reproducibility hackathons!<a href="https://t.co/PssdXqwl8Z">https://t.co/PssdXqwl8Z</a></p>&mdash; annakrystalli (@annakrystalli) <a href="https://twitter.com/annakrystalli/status/1138769695513952260?ref_src=twsrc%5Etfw">June 12, 2019</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
]
--
.pull-right[
]
---
# On the day
- #### Review and select papers for reproduction
- #### Work with materials and reproduce
- #### Discuss
- #### Feed back to authors
---
class: inverse, bottom, left
# .font_title[Benefits]
***
---
# Participants
.pull-left[
1. #### Practical reproducibility they can implement in their own work
]
.pull-right[
]
---
# Participants
.pull-left[
1. #### Practical reproducibility they can implement in their own work
]
.pull-right[
]
---
# Participants
.pull-left[
1. Practical reproducibility they can implement in their own work
2. #### Inspiration from working with other people’s code and data.
]
.pull-right[
]
---
# Participants
.pull-left[
1. Practical reproducibility they can implement in their own work
2. Inspiration from working with other people’s code and data.
3. #### Reproduction as community value
]
.pull-right[
]
---
# Authors
.pull-left[
1. #### Useful feedback on the reproducibility of their work
]
.pull-right[
]
---
# Authors
.pull-left[
1. Useful feedback on the reproducibility of their work
2. #### Appreciation for their efforts in making their work reproducible
]
.pull-right[
]
---
# Authors
.pull-left[
1. Useful feedback on the reproducibility of their work
2. #### Appreciation for their efforts in making their work reproducible
]
.pull-right[
]
---
# Authors
.pull-left[
1. Useful feedback on the reproducibility of their work
2. Appreciation for their efforts in making their work reproducible
3. #### An opportunity to engage others with their research.
]
.pull-right[
]
---
class: inverse, left, bottom
# .font_title[Some lessons]
***
---
# Reproducing papers is fun!!
.pull-left[
]
---
# Reproducing papers is fun!!
.pull-left[
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Huge thanks to <a href="https://twitter.com/EnviroKaty?ref_src=twsrc%5Etfw">@EnviroKaty</a> for submitting a fab 🦋 🦋🦋 paper to the <a href="https://twitter.com/hashtag/CCMcr19?src=hash&amp;ref_src=twsrc%5Etfw">#CCMcr19</a> <a href="https://twitter.com/hashtag/ReproHack?src=hash&amp;ref_src=twsrc%5Etfw">#ReproHack</a>! I had loads of fun reproducing the analysis for this really cool paper <a href="https://t.co/v1ww2D5xhg">https://t.co/v1ww2D5xhg</a> <a href="https://t.co/r8rYMAMvPm">pic.twitter.com/r8rYMAMvPm</a></p>&mdash; Jessica Ward (@JKRWard) <a href="https://twitter.com/JKRWard/status/1144254546841165827?ref_src=twsrc%5Etfw">June 27, 2019</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
]
.pull-right[
<blockquote class="twitter-tweet"><p lang="en" dir="ltr">Many thanks to <a href="https://twitter.com/annakrystalli?ref_src=twsrc%5Etfw">@annakrystalli</a> for a brilliant <a href="https://twitter.com/hashtag/ReproHack?src=hash&amp;ref_src=twsrc%5Etfw">#ReproHack</a> at <a href="https://twitter.com/hashtag/CCMcr19?src=hash&amp;ref_src=twsrc%5Etfw">#CCMcr19</a> today - and mega thanks to <a href="https://twitter.com/Ben_C_J?ref_src=twsrc%5Etfw">@Ben_C_J</a> for nominating one of his papers with <a href="https://twitter.com/LisaDeBruine?ref_src=twsrc%5Etfw">@LisaDeBruine</a> and colleagues to see if we could reproduce the modelling results - and we could! 💯 😀👍 <a href="https://twitter.com/hashtag/opencode?src=hash&amp;ref_src=twsrc%5Etfw">#opencode</a> <a href="https://twitter.com/hashtag/opendata?src=hash&amp;ref_src=twsrc%5Etfw">#opendata</a> ftw!</p>&mdash; Andrew Stewart (@ajstewart_lang) <a href="https://twitter.com/ajstewart_lang/status/1144316430063677446?ref_src=twsrc%5Etfw">June 27, 2019</a></blockquote> <script async src="https://platform.twitter.com/widgets.js" charset="utf-8"></script>
]
---
background-image: url("assets/storytelling-inv.jpg")
# People love stories
...i.e. literate programming
.pull-left[
> Awesome work, I had a lot of fun reproducing the analysis and investigating the paper. I'm now looking forward to playing around with the code for wrangling inaturalist data!!
> --- Jessica Ward on _["Comparisons of Citizen Science Data-Gathering Approaches to Evaluate Urban Butterfly Diversity"](https://www.mdpi.com/2075-4450/9/4/186)_ submitted by Kathleen Prudic
]
.pull-right[
> It was great working with someone else's markdown script - the .Rmd file itself was written in a really clear and transparent manner with lots of helpful comments and signposting as to what each chunk of analysis did.
> --- Andrew Stewart on _["Comparing theory-driven and data-driven attractiveness models using images of real women’s faces"](https://psyarxiv.com/vhc5k)_ submitted by Ben Jones
]
---
class: inverse, left, bottom
# .font_title[Future Development]
***
---
# A growing team!
.image_profile[]
### [Florencia D'Andrea](https://rladies.org/argentina-rladies/name/maria-dandrea/)
Postdoc at the National Agricultural Technology Institute of Argentina
---
# Reproducible Reprohacks
.pull-left[
#### Current setup
- paper list compiled in shiny app
- Google forms to submit papers & author feedback
- GitHub repo to run event
<br>
[reprohack/reprohack-template-shiny](https://github.com/reprohack/reprohack-template-shiny)|[instructions](https://github.com/reprohack/reprohack-hq/blob/master/organiser_instructions.md)
]
--
.pull-right[
#### Next Generation setup
- All through GitHub
- Submit papers through pull requests
- Track Reproductions through issues
.image_profile[
<img src="assets/Radovan-Bast.jpeg" height=150px width=150px/>
]
##### [Radovan Bast](https://bast.fr/)
University of Tromsø/Code Refinery
See [issue #10](https://github.com/reprohack/reprohack-hq/issues/10)
]
---
# Many ways to ReproHack
<img src="https://github.com/reprohack/reprohack-hq/blob/master/assets/workflow.png?raw=true" width=700px />
---
# ReproHack outputs: [ReScience C](http://rescience.github.io/)
.pull-left[
#### Replication Report
- Repeat a published protocol
- Respect its spirit and intentions
- Varying the technical details, e.g. using different software, initial conditions, etc.
👉 **Change something that everyone believes shouldn’t matter, and see if the scientific conclusions are affected**
]
.pull-right[
]
---
# ReproHack outputs: [ReScience C](http://rescience.github.io/)
.pull-left[
#### Replication Report
- Repeat a published protocol
- Respect its spirit and intentions
- Varying the technical details, e.g. using different software, initial conditions, etc.
👉 **Change something that everyone believes shouldn’t matter, and see if the scientific conclusions are affected**
]
.pull-right[
#### Reproducibility Report
- How easy/hard it was to re-run everything,
- If the same results as the ones published were obtained,
- If different architectures were used, etc.
- What else?
]
---
# ReproHack outputs: [SciGen.Report](https://scigen.report/)
Check Reproducibility status of a paper
---
# ReproHack outputs: [SciGen.Report](https://scigen.report/)
Short Reproducibility status report
For more details see [issue #6](https://github.com/reprohack/reprohack-hq/issues/6)
---
# Get involved!
### [reprohack-hq](https://github.com/reprohack/reprohack-hq) repository
#### Check out our [issues](https://github.com/reprohack/reprohack-hq/issues)
#### Chat to us:
[](https://gitter.im/reprohack/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge)
#### Sign up to our Newsletter
<form style="border:1px solid #ccc;padding:3px;text-align:center;" action="https://tinyletter.com/reprohack-hq" method="post" target="popupwindow" onsubmit="window.open('https://tinyletter.com/reprohack-hq', 'popupwindow', 'scrollbars=yes,width=800,height=600');return true"><p><label for="tlemail">Enter your email address</label></p><p><input type="text" style="width:140px" name="email" id="tlemail" /></p><input type="hidden" value="1" name="embed"/><input type="submit" value="Subscribe" /><p><a href="https://tinyletter.com" target="_blank">powered by TinyLetter</a></p></form>
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