GitHub - anotherkaizhang/MS

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Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
1. prepare_For_DBNet.ipynb		1. prepare_For_DBNet.ipynb
2. DBNet-EHRs+Notes.ipynb		2. DBNet-EHRs+Notes.ipynb
2. DBNet-MRIs+EHRs.ipynb		2. DBNet-MRIs+EHRs.ipynb
2. DBNet-MRIs+notes.ipynb		2. DBNet-MRIs+notes.ipynb
2. DBNet-OnlyMRIs.ipynb		2. DBNet-OnlyMRIs.ipynb
3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamFlair-Medcam.ipynb		3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamFlair-Medcam.ipynb
3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamPD-Medcam.ipynb		3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamPD-Medcam.ipynb
3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT1Post-Medcam.ipynb		3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT1Post-Medcam.ipynb
3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT1Pre-Medcam.ipynb		3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT1Pre-Medcam.ipynb
3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT2-Medcam.ipynb		3D_classification-MultiModal-50-50-L1Distance+BCE_50-50-GradcamT2-Medcam.ipynb
ReadMe		ReadMe
main-MSProject-UseMedEmbedding.ipynb		main-MSProject-UseMedEmbedding.ipynb

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Code for the paper "Predicting multiple sclerosis disease progression with multimodal deep neural networks"

1. Use "3D_classification-*.ipynb" to process the MRI sequences and generate the embeddings
2. Use "/main-MSProject-UseMedEmbedding.ipynb" to process clinical notes and generate the embeddings
3. Use "1. prepare_For_DBNet.ipynb" to process the MRI embeddings, notes embeddings, labs, vitals, medications, demographics into the correct input format of the prediction network
4. Use "2. DBNet-EHRs+Notes.ipynb", "2. DBNet-MRIs+EHRs.ipynb", "2. DBNet-MRIs+notes.ipynb", "2. DBNet-OnlyMRIs.ipynb" to take different combinations of inputs for prediction.