Pinned

1. NodeRAD NodeRAD Public

   RADSeq tool with Snakemake workflow integration for analysis of RAD sequencing data.

   Python 3

2. RADSeq RADSeq Public

   About tool NodeRAD (https://github.com/AntonieV/NodeRAD): Analysis of RAD-Seq data as an optimization problem considering sequencing errors and mutation rates.

   TeX 2

3. snakemake-workflows/chipseq snakemake-workflows/chipseq Public

   ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).

   Python 25 18

4. snakemake/snakemake-wrappers snakemake/snakemake-wrappers Public

   This is the development home of the Snakemake wrapper repository, see

   Python 206 176

5. snakemake-workflows/rna-seq-kallisto-sleuth snakemake-workflows/rna-seq-kallisto-sleuth Public

   A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

   Python 63 43

6. AoC2023 AoC2023 Public

   Advent of Code 2023

   Jupyter Notebook