Assignment

1.Subset the data for only the Exocrine (adenocarcinoma) tumors and remove Neuroendocrine tumors.

analyis was carried out in phantus

What does the analysis say about the general behavior of the different samples?

• Most common type of Pancreatic Adenocarcinoma is exocrine and neuroendocrine are minority

Are the neuroendocrine tumors clearly separable from the adenocarcinoma tumors?

• By using PCA neuroendocrine tumors are clearly separable from adenocarcinoma tumor

What can be said about the variance of the PCA?

Used the filter option in the menu bar to filter out neuroendocrine tumors dataset

2. Understand the effect of Interferons in Pancreatic Adenocarcinoma

subsetted dataset for GSVA analysis