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flask-appbuilder 1.10.0 has requirement Flask<0.12.99,>=0.12.1, but you'll have flask 1.0.2 which is incompatible #4953

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Neuliaus opened this Issue May 8, 2018 · 16 comments

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@Neuliaus

Neuliaus commented May 8, 2018

I'm running a normal installation on
AWS
t2.medium
Ubuntu 16.04
Python 2.7
pip 10.0.1
Inside venv

Superset version

0.20.4
Following installation instructiorn

Expected results

Install and use Superset

Actual results

flask-appbuilder 1.10.0 has requirement Flask<0.12.99,>=0.12.1, but you'll have flask 1.0.2 which is incompatible.

Steps to reproduce

sudo virtualenv venv
21 python -V
22 pip -V
23 virtualenv venv
24 . ./venv/bin/activate
25 pip install --upgrade setuptools pip
26 pip install superset
27 pip show flask-appbuilder

Name: Flask-AppBuilder
Version: 1.10.0
Summary: Simple and rapid application development framework, built on top of Flask. includes detailed security, auto CRUD generation for your models, google charts and much more.
Home-page: https://github.com/dpgaspar/flask-appbuilder/
Author: Daniel Vaz Gaspar
Author-email: danielvazgaspar@gmail.com
License: BSD
Location: /home/ubuntu/venv/lib/python2.7/site-packages
Requires: Flask-Babel, Flask-OpenID, click, Flask-Login, Flask, colorama, Flask-SQLAlchemy, python-dateutil, Flask-WTF

@Neuliaus

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Neuliaus commented May 8, 2018

I did uninstall Flask inside the venv , then I installed pip install -U 'Flask~=0.12.2'
pip install superset and seems to work
then I hit superset db upgrade and get

INFO  [alembic.runtime.migration] Context impl SQLiteImpl.
INFO  [alembic.runtime.migration] Will assume transactional DDL.
Traceback (most recent call last):
  File "/home/ubuntu/normal/venv3/bin/superset", line 15, in <module>
    manager.run()
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/flask_script/__init__.py", line 417, in run
    result = self.handle(argv[0], argv[1:])
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/flask_script/__init__.py", line 386, in handle
    res = handle(*args, **config)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/flask_script/commands.py", line 216, in __call__
    return self.run(*args, **kwargs)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/flask_migrate/__init__.py", line 259, in upgrade
    command.upgrade(config, revision, sql=sql, tag=tag)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/command.py", line 254, in upgrade
    script.run_env()
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/base.py", line 427, in run_env
    util.load_python_file(self.dir, 'env.py')
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/util/pyfiles.py", line 81, in load_python_file
    module = load_module_py(module_id, path)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/util/compat.py", line 141, in load_module_py
    mod = imp.load_source(module_id, path, fp)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/superset/migrations/env.py", line 103, in <module>
    run_migrations_online()
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/superset/migrations/env.py", line 96, in run_migrations_online
    context.run_migrations()
  File "<string>", line 8, in run_migrations
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/runtime/environment.py", line 836, in run_migrations
    self.get_context().run_migrations(**kw)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/runtime/migration.py", line 321, in run_migrations
    for step in self._migrations_fn(heads, self):
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/command.py", line 243, in upgrade
    return script._upgrade_revs(revision, rev)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/base.py", line 336, in _upgrade_revs
    revs = list(revs)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/revision.py", line 656, in _iterate_revisions
    uppers = util.dedupe_tuple(self.get_revisions(upper))
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/revision.py", line 301, in get_revisions
    resolved_id, branch_label = self._resolve_revision_number(id_)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/revision.py", line 437, in _resolve_revision_number
    self._revision_map
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/util/langhelpers.py", line 239, in __get__
    obj.__dict__[self.__name__] = result = self.fget(obj)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/revision.py", line 122, in _revision_map
    for revision in self._generator():
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/base.py", line 99, in _load_revisions
    script = Script._from_filename(self, vers, file_)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/script/base.py", line 812, in _from_filename
    module = util.load_python_file(dir_, filename)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/util/pyfiles.py", line 81, in load_python_file
    module = load_module_py(module_id, path)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/alembic/util/compat.py", line 141, in load_module_py
    mod = imp.load_source(module_id, path, fp)
  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/superset/migrations/versions/289ce07647b_add_encrypted_password_field.py", line 16, in <module>
    from sqlalchemy_utils.types.encrypted import EncryptedType
**ImportError: cannot import name EncryptedType**
thoughts ?
@findepi

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findepi commented May 8, 2018

@Neuliaus i worked around this by pinning

'flask==0.12.4'
'SQLAlchemy-Utils~=0.0,<0.33'

as in inspirehep/inspire-next@828856e (inveniosoftware/invenio-oauth2server#170)

@mistercrunch

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mistercrunch commented May 8, 2018

This is related to the notes in https://github.com/apache/incubator-superset/blob/master/UPDATING.md (the 3rd item)

@findepi

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findepi commented May 8, 2018

@mistercrunch thanks for referencing the update notes. I must admit i didn't read them.
I don't build from sources. Today I just pip install superset==0.25.0 in a completely fresh env (+ some optional dependencies needed in my flow, like gevent, pyhive). Then I run fabmanager or gunicorn superset:app -- I don't have any specific version requirements for flask or sqlalchemy or anything else. How can i incorporate pip install -r requirements.txt in this flow?

mistercrunch added a commit to mistercrunch/superset that referenced this issue May 8, 2018

[deps] force flask<=1.0.0
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes apache#4953

We should ship a 0.25.1 with this in
@gitvikram

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gitvikram commented May 11, 2018

Please help on this , i am able to login in Superset but getting below exception

INFO [alembic.runtime.migration] Context impl SQLiteImpl.
INFO [alembic.runtime.migration] Will assume transactional DDL.
Traceback (most recent call last):
File "superset", line 15, in
manager.run()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_script_init_.py", line 417, in run
result = self.handle(argv[0], argv[1:])
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_script_init_.py", line 386, in handle
res = handle(*args, **config)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_script\commands.py", line 216, in call
return self.run(*args, **kwargs)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_migrate_init_.py", line 259, in upgrade
command.upgrade(config, revision, sql=sql, tag=tag)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\command.py", line 254, in upgrade
script.run_env()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\base.py", line 427, in run_env
util.load_python_file(self.dir, 'env.py')
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\util\pyfiles.py", line 81, in load_python_file
module = load_module_py(module_id, path)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\util\compat.py", line 83, in load_module_py
spec.loader.exec_module(module)
File "", line 678, in exec_module
File "", line 205, in _call_with_frames_removed
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\superset/migrations\env.py", line 103, in
run_migrations_online()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\superset/migrations\env.py", line 96, in run_migrations_online
context.run_migrations()
File "", line 8, in run_migrations
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\runtime\environment.py", line 836, in run_migrations
self.get_context().run_migrations(**kw)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\runtime\migration.py", line 321, in run_migrations
for step in self._migrations_fn(heads, self):
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\command.py", line 243, in upgrade
return script._upgrade_revs(revision, rev)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\base.py", line 336, in _upgrade_revs
revs = list(revs)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\revision.py", line 656, in _iterate_revisions
uppers = util.dedupe_tuple(self.get_revisions(upper))
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\revision.py", line 301, in get_revisions
resolved_id, branch_label = self.resolve_revision_number(id)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\revision.py", line 437, in _resolve_revision_number
self._revision_map
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\util\langhelpers.py", line 239, in get
obj.dict[self.name] = result = self.fget(obj)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\revision.py", line 122, in _revision_map
for revision in self._generator():
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\base.py", line 99, in _load_revisions
script = Script.from_filename(self, vers, file)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\script\base.py", line 812, in from_filename
module = util.load_python_file(dir
, filename)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\util\pyfiles.py", line 81, in load_python_file
module = load_module_py(module_id, path)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\alembic\util\compat.py", line 83, in load_module_py
spec.loader.exec_module(module)
File "", line 678, in exec_module
File "", line 205, in _call_with_frames_removed
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\superset\migrations\versions\289ce07647b_add_encrypted_password_field.py", line 16, in
from sqlalchemy_utils.types.encrypted import EncryptedType
ImportError: cannot import name 'EncryptedType'

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gitvikram commented May 11, 2018

Traceback (most recent call last):
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1997, in call
return self.wsgi_app(environ, start_response)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1985, in wsgi_app
response = self.handle_exception(e)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1540, in handle_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_compat.py", line 33, in reraise
raise value
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1982, in wsgi_app
response = self.full_dispatch_request()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1614, in full_dispatch_request
rv = self.handle_user_exception(e)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1517, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_compat.py", line 33, in reraise
raise value
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1612, in full_dispatch_request
rv = self.dispatch_request()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask\app.py", line 1598, in dispatch_request
return self.view_functionsrule.endpoint
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_appbuilder\security\decorators.py", line 26, in wraps
return f(self, args, **kwargs)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_appbuilder\views.py", line 475, in list
widgets = self._list()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_appbuilder\baseviews.py", line 883, in _list
page_size=page_size)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_appbuilder\baseviews.py", line 793, in _get_list_widget
count, lst = self.datamodel.query(joined_filters, order_column, order_direction, page=page, page_size=page_size)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\flask_appbuilder\models\sqla\interface.py", line 115, in query
count = query_count.scalar()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\orm\query.py", line 2913, in scalar
ret = self.one()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\orm\query.py", line 2884, in one
ret = self.one_or_none()
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\orm\query.py", line 2854, in one_or_none
ret = list(self)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\orm\query.py", line 2925, in iter
return self._execute_and_instances(context)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\orm\query.py", line 2948, in _execute_and_instances
result = conn.execute(querycontext.statement, self._params)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\base.py", line 948, in execute
return meth(self, multiparams, params)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\sql\elements.py", line 269, in _execute_on_connection
return connection._execute_clauseelement(self, multiparams, params)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\base.py", line 1060, in _execute_clauseelement
compiled_sql, distilled_params
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\base.py", line 1200, in _execute_context
context)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\base.py", line 1413, in _handle_dbapi_exception
exc_info
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\util\compat.py", line 203, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\util\compat.py", line 186, in reraise
raise value.with_traceback(tb)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\base.py", line 1193, in _execute_context
context)
File "C:\Users\vsingh2\AppData\Local\Programs\Python\Python36\Scripts\demo\lib\site-packages\sqlalchemy\engine\default.py", line 507, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) no such table: dbs [SQL: 'SELECT count(?) AS count_1 \nFROM dbs'] [parameters: ('
',)] (Background on this error at: http://sqlalche.me/e/e3q8)

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TianyangLi commented May 12, 2018

@gitvikram to solve the 'Encrypted Type' issue you need to reinstall sqlalchemy-utils to <0.33.0

as for the sqlite3.operationalerror..i'm still figuring that part out, i suspect it has something to do with the flask version.

@TianyangLi TianyangLi referenced this issue May 13, 2018

Closed

psycopg2.ProgrammingError #4618

0 of 3 tasks complete
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mistercrunch commented May 13, 2018

@gitvikram windows isn't really supported at the moment

mistercrunch added a commit that referenced this issue May 13, 2018

[deps] force flask<=1.0.0 (#4959)
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes #4953

We should ship a 0.25.1 with this in
@findepi

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findepi commented May 14, 2018

@mistercrunch you closed this having fixed the flask version issue, but @Neuliaus actually reported two problems, the second being

  File "/home/ubuntu/normal/venv3/local/lib/python2.7/site-packages/superset/migrations/versions/289ce07647b_add_encrypted_password_field.py", line 16, in <module>
    from sqlalchemy_utils.types.encrypted import EncryptedType
**ImportError: cannot import name EncryptedType**

i was able to work around this pinning 'SQLAlchemy-Utils~=0.0,<0.33'. If this is the way to go, this should be pinned too, just as flask version.

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AndreLesa commented May 14, 2018

The easiest workaround for now is to just install the requirements as they currently are in the master branch.

Just before running pip install superset, I did:

wget https://raw.githubusercontent.com/apache/incubator-superset/master/requirements.txt

pip install -r requirements.txt

This get's the latest merged requirements.txt and then you install the dependencies that way.

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findepi commented May 14, 2018

@AndreLesa , as I described my pip install-based use-case before (#4953 (comment)), what you propose doesn't seem better than just manually pinning the problematic dependencies. -- How can I know that master's requirements.txt file is compatible with the version I download with pip?
(Sure, I can look for requirements.txt under "correct" tag, but then I need to assume/know/require git tags and pip versions are the same...)

mistercrunch added a commit that referenced this issue May 14, 2018

[deps] force flask<=1.0.0 (#4959)
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes #4953

We should ship a 0.25.1 with this in

(cherry picked from commit 2c5200a)

@mistercrunch mistercrunch reopened this May 14, 2018

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mistercrunch commented May 14, 2018

I just released 0.25.1 which pins Flask<1.0 . Is the issue with SQLAlchemy-Utils related to flask being 1+, or do we need to pin that as well? BTW I couldn't reproduce this here on a fresh virtualenv, what python version is that?

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findepi commented May 15, 2018

@mistercrunch i just tried this once again:

Env is Python 2.7 in ubuntu:16.04. (2.7 is somewhat "recommended" on https://superset.incubator.apache.org/installation.html: "Airbnb currently uses 2.7.* in production")
(You can see details of my env and all the changes i did for the below in my WIP branch https://github.com/starburstdata/superset-docker/commits/findepi/unpin-sqlalchemy)

  1. Is the issue with SQLAlchemy-Utils related to flask being 1+, or do we need to pin that as well?

    I unpinned SQLAlchemy-Utils without upgrading superset and with flask remaining pinned. Result: https://travis-ci.org/starburstdata/superset-docker/builds/379081519

      File "/usr/local/lib/python2.7/dist-packages/superset/migrations/versions/289ce07647b_add_encrypted_password_field.py", line 16, in <module>
        from sqlalchemy_utils.types.encrypted import EncryptedType
    ImportError: cannot import name EncryptedType
    
  2. I just released 0.25.1 which pins Flask<1.0

    I unpinned flask and bump superset version to 0.25.2 (released yesterday). Result: https://travis-ci.org/starburstdata/superset-docker/builds/379094497

    pkg_resources.DistributionNotFound: The 'Flask<0.12.99,>=0.12.1' distribution was not found and is required by Flask-AppBuilder
    

I must be doing something wrong.

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mistercrunch commented May 15, 2018

But at that point you were already upgrade to Flask 1+ weren't you?

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findepi commented May 15, 2018

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mistercrunch commented May 15, 2018

@xrmx xrmx referenced this issue May 15, 2018

Closed

ImportError: No module named 'flask.exthook' #5006

3 of 3 tasks complete

michellethomas added a commit to michellethomas/panoramix that referenced this issue May 24, 2018

[deps] force flask<=1.0.0 (apache#4959)
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes apache#4953

We should ship a 0.25.1 with this in

timifasubaa added a commit to timifasubaa/incubator-superset that referenced this issue May 31, 2018

[deps] force flask<=1.0.0 (apache#4959)
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes apache#4953

We should ship a 0.25.1 with this in

wenchma pushed a commit to wenchma/incubator-superset that referenced this issue Nov 16, 2018

[deps] force flask<=1.0.0 (apache#4959)
flask 1.0 came out and has backwards incompatible changes. People
are reporting that fresh install doesn't work anymore.

fixes apache#4953

We should ship a 0.25.1 with this in
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