What should template_mmcif_dir be?

[panganqi]

For training use ColabFold pipeline (and templates with HHsearch), there is a path template_mmcif_dir.
Should it be something like data/pdb_mmcif/mmcif_files/ or other precomputed folders？

[gahdritz]

It should just point to a directory containing mmCIF files corresponding to the sequences in the database on which the HHsearch template search was run. If you're using scripts/precompute_alignments_mmseqs.py, which uses pdb70 as that database, to precompute alignments, then yeah, data/pdb_mmcif/mmcif_files is the way to go.