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weights for single sequence mode? #368

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emzodls opened this issue Nov 20, 2023 · 1 comment
Closed

weights for single sequence mode? #368

emzodls opened this issue Nov 20, 2023 · 1 comment

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@emzodls
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emzodls commented Nov 20, 2023

Hi, I'm trying to run openfold in single sequence mode (using ESM1b embeddings). I'm following the instructions on the main page but I don't seem to have the parameters file referenced "seq_model_esm1b_ptm.pt." I tried using "finetuning_no_tmpl_ptm_1.pt" but I got a missing keys errors (trying without the config_preset "seq_model_esm1b_ptm" and with the --use_single_seq_mode flag instead also resulted in missing keys errors though a different set of keys).

What is the correct way to run openfold in single sequence mode currently, and are there any other parameter files I need to download for this?

@jnwei
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jnwei commented Nov 30, 2023

Hi, thank you for your interest. The parameter files are now available as of #373 . You should now be able to run the single sequence model, but please let us know if you run into other issues.

@jnwei jnwei closed this as completed Nov 30, 2023
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