Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Region of Interests do not show up in FIJI. #19

Open
jamnickn opened this issue Feb 2, 2023 · 1 comment
Open

Region of Interests do not show up in FIJI. #19

jamnickn opened this issue Feb 2, 2023 · 1 comment

Comments

@jamnickn
Copy link

jamnickn commented Feb 2, 2023

I add in my ROI's in celllpose. I save the file as 'save masks as PNG/tif'.

In FIJI I select single image supply image that I uploaded to cellpose as well as the new saved file (mask file) in the path to label image. When I click next nothing shows up only the original image I uploaded to cellpose. No regions of interest whatsoever. Or data, etc.

Any advice?

@jamnickn
Copy link
Author

jamnickn commented Feb 2, 2023

Click browse 1
Path to original image /Users/njam/Google Drive/My Drive/H&E/36.ome.tif
Click browse 2
Path to label image /Users/njam/Google Drive/My Drive/H&E/36.ome_cp_masks.png
Reading IFDs
Populating metadata
Reading IFDs
Populating metadata
Exception in thread "AWT-EventQueue-0" Traceback (most recent call last):
File "Labels_To_Rois.py", line 495, in f2_clic_next
AttributeError: 'NoneType' object has no attribute 'show'

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant