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phyloglm() alpha > 50 #14

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matthieu-haudiquet opened this issue Dec 2, 2019 · 0 comments
Closed

phyloglm() alpha > 50 #14

matthieu-haudiquet opened this issue Dec 2, 2019 · 0 comments

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@matthieu-haudiquet
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Hi,

Thanks for this great package.

I noticed this warning when running the rr2:R2() function on the results of phyloglm() :

Warning message:
In R2.lik.phyloglm(mod, mod.r) :
  In mod, estimate of alpha >50, so model refit with glm()

But the problem is that an alpha > 50 does not always mean that there is no phylogenetic signal (as stated in the doc of rr2), see : lamho86/phylolm#28

Best

@arives arives closed this as completed Dec 22, 2019
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