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Event.py
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Event.py
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class Event(object):
"""
Very basic class to represent a nanopore
translocation event for a single pore
based upon data in the Events table of
a Oxford Nanopore FAST5 (HDF5) file
"""
def __init__(self, row):
self.row = row
try:
self.mean = row['mean']
except IndexError:
self.mean = ""
try:
self.start = row['start']
except IndexError:
self.start = ""
try:
self.stdv = row['stdv']
except IndexError:
self.stdv = ""
try:
self.length = row['length']
except IndexError:
self.length = ""
try:
self.model_state = row['model_state']
except IndexError:
self.model_state = ""
try:
self.model_level = row['model_level']
except IndexError:
self.model_level = ""
try:
self.move = row['move']
except IndexError:
self.move = ""
try:
self.p_model_state = row['p_model_state']
except IndexError:
self.p_model_state = ""
try:
self.mp_state = row['mp_state']
except IndexError:
self.mp_state = ""
try:
self.p_mp_state = row['p_mp_state']
except IndexError:
self.p_mp_state = ""
try:
self.p_A = row['p_A']
except IndexError:
self.p_A = ""
try:
self.p_C = row['p_C']
except IndexError:
self.p_C = ""
try:
self.p_G = row['p_G']
except IndexError:
self.p_G = ""
try:
self.p_T = row['p_T']
except IndexError:
self.p_T = ""
def __repr__(self):
return '\t'.join([str(s) for s in [self.mean, self.start, self.stdv,
self.length, self.model_state,
self.model_level, self.move,
self.p_model_state,
self.mp_state, self.p_mp_state,
self.p_A, self.p_C,
self.p_G, self.p_T]])