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Add sparse matrices (from Matrix package) as expression input on the transcriptogramStep1() method #9

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iaradsouza1 opened this issue Apr 5, 2024 · 0 comments
Open

Add sparse matrices (from Matrix package) as expression input on the transcriptogramStep1() method #9

iaradsouza1 opened this issue Apr 5, 2024 · 0 comments

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@iaradsouza1
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It is impractical to use a data.frame on transcriptogramStep1 when dealing with single-cell matrices. It takes too much time and memory to convert any sparse matrix (default object for seurat, for example) to a matrix or a data.frame.
@iaradsouza1 iaradsouza1 changed the title Add sparse matrices (form Matrix package) as expression input on the transcriptogramStep1() method Add sparse matrices (from Matrix package) as expression input on the transcriptogramStep1() method Apr 5, 2024
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