Here you can find a brief description of the Leica CAM commands.
Currently matrixscreener have implemented some convenience methods:
- start_scan
- stop_scan
- pause_scan
- enable
- disable
- enable_all
- disable_all
- save_template
- load_template
- get_information
But all commands can be sent like this:
command = [('cmd', 'enableall'),
('value', 'true')]
cam.send(command)
| cmd |
description |
| startscan |
start matrix scan |
| stopscan |
stop matrix scan |
| pausescan |
toggle pause of matrix scan |
| autofocusscan |
start matrix focus scan |
| load |
load specific experiment from XML |
| save |
save experiment positions to XML |
| enable |
enable single scan field |
| disable |
disable single scan field |
| enableall |
enable all scan fields |
| disableall |
disable all scan fields |
| getinfo |
get information about stage, z-drive, COR-ring, job list, patter list, scan status, experiment, position, load position, autofocus mode (galvo or wide), autofocus position |
| cmd |
description |
| deletelist |
remove scan fields added to CAM list |
| startcamscan |
start scan of CAM list |
| stopcamscan |
stop scan of CAM list |
| add |
add scan field to CAM list |
| stopwaitingforcam |
close Waiting for External Command dialog and continue experiment |
| skip |
close Waiting for External Command and stop, continue or leave pattern |
| skip |
doesn't need wait for ext. command: continue with next job, scan field or well, or go to lower CAM level |
| cmd |
description |
| pump |
set pump and interval time for water pump |
| adjust |
set settings for pinhole (airy units) or pmt (offset, gain) |
| adjustls |
adjust light source, wavelength and intensity of laser |
| loop |
adjust number of well loops and timing |
| barcode |
set barcode of experiment |
| adjustmosaic |
adjust width, height, start position and autofocus fields of mosaic |
| adjustmatrix |
adjust start position, well distance and scan field distance of matrix |
| enableattribute |
enable drift compensation, tracking or pump for given field |
| cmd |
description |
| setposition |
move stage or z-drive to specified position |
| movetowell |
move to first scan field of given well |
| savecurrentposition |
save a position to memory |
| returntosavedposition |
return to a position saved in memory |
| loadposition |
move to load position defined in experiment |
| startposition |
move to start position defined in experiment |
| cmd |
description |
| selectfield |
select scan fields for assigning jobs |
| selectallfields |
select all scan fields |
| assignjob |
asign job to selected fields |
| cmd |
description |
| maf + addxyza |
insert position to mark and find list |
| maf + delete |
delete mark and find list |
| maf + load |
load mark and find list from xml |
| maf + save |
save mark and find list to xml |
| maf + toselected |
assign mark and find list to given well |
| maf + toall |
assign mark and find list to all wells |