/
default.nix
65 lines (58 loc) · 1.54 KB
/
default.nix
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{ stdenv
, fetchFromGitHub
, cmake
, boost
, fftw
, fftwFloat
, hdf5
, itk
, swig
, niftyreg
, gadgetron
, ismrmrd
, petmr-rd-tools
, pythonPackages
, stir
}:
let
rev = "v2.2.0";
sha256 = "0ffdim0anq298nlglys4w2w52721rj96mgk251cs294c5i0dxp6m";
in stdenv.mkDerivation rec {
name = "sirf-${rev}";
src = fetchFromGitHub {
owner = "CCPPETMR";
repo = "SIRF";
fetchSubmodules = true;
inherit rev sha256;
};
cmakeFlags = [
"-DBUILD_PYTHON=ON"
"-DDOWNLOAD_ZENODO_TEST_DATA=OFF"
"-DSTIR_DIR=${stir}/lib/cmake"
"-DFFTW3f_DIR=${fftwFloat.dev}/lib/cmake/fftw3"
"-DNIFTYREG_Source_DIR=${niftyreg}/src"
"-DNIFTYREG_Binary_DIR=${niftyreg}/bin"
"-DNIFTYREG_DIR=${niftyreg}"
];
preConfigure = ''
cmakeFlags="-DPYTHON_DEST=$out/${pythonPackages.python.sitePackages} $cmakeFlags"
'';
postInstall = ''
mkdir -p $(dirname $out/${pythonPackages.python.sitePackages})
mv $out/python $out/${pythonPackages.python.sitePackages}
'';
pythonPath = ""; # Makes python.buildEnv include libraries
enableParallelBuilding = true;
buildInputs = [ boost cmake itk fftwFloat hdf5 swig niftyreg ];
# buildInputs = [ boost cmake itk fftw fftwFloat hdf5 swig ];
propagatedBuildInputs = [ gadgetron ismrmrd petmr-rd-tools stir ]
++ ( with pythonPackages; [
python
numpy scipy (matplotlib.override { enableQt = true; })
docopt h5py /*libxml2*/ psutil nose
] );
meta = {
# description = "Software for Tomographic Image Reconstruction";
# homepage = http://stir.sourceforge.net;
};
}