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DESCRIPTION
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DESCRIPTION
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Package: MAFDash
Type: Package
Title: Create an HTML Dashboard to Visualize Data from MAF File
Version: 0.2.3
Authors@R: c(
person("Ashish", "Jain", role = c("aut", "cre"), email = "jain.ashishjain1@gmail.com"),
person("Mayank", "Tandon", role = c("aut"), email = "mtandon09@gmail.com"),
person("Frederick National Laboratory For Cancer Research", role = c("cph"))
)
Description: Mutation Annotation Format (MAF) is a tabular data format used for storing genetic mutation data.
For example, The Cancer Genome Atlas (TCGA) project has made MAF files from each project publicly available.
This package contains a set of tools to easily create an HTML dashboard to summarize and visualize data from MAF file.
The resulting HTML file serves as a self-contained report that can be used to explore the result.
License: GPL
VignetteBuilder: knitr
Depends:
R (>= 4.0.0),
rmarkdown (>= 2.5.0),
knitr (>= 1.3),
ggplot2 (>= 2.3.3),
TCGAbiolinks (>= 2.14.1),
maftools (>= 2.0.0),
Imports:
DT (>= 0.16.0),
htmltools (>= 0.5.0),
flexdashboard (>= 0.5.2),
bsplus (>= 0.1.2),
crosstalk (>= 1.1.0),
plotly (>= 4.9.2),
canvasXpress (>= 1.29.0),
dplyr (>= 1.0.2),
ComplexHeatmap (>= 2.2.0),
circlize (>= 0.4.11),
ggbeeswarm (>= 0.6.0),
ensurer (>= 1.1.0),
data.table (>= 1.13.2),
reshape2 (>= 1.4.4),
GenomicRanges (>= 1.38.0),
IRanges (>= 2.20.0),
pheatmap (>= 1.0.0),
tibble (>= 3.1.3),
readr (>= 2.0.0),
tidyr (>= 1.1.3),
Suggests:
BSgenome.Hsapiens.UCSC.hg38 (>= 1.4.3),
URL: https://github.com/ashishjain1988/MAFDash/
BugReports: https://github.com/ashishjain1988/MAFDash/issues
Suggests: jsonlite
Encoding: UTF-8
RoxygenNote: 7.2.3