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Hi,
Thanks for creating this super simple tool to open and modify gtfs. I used it to add the introns not annotated in my gtf (from Zea mays aka corn). Worked like a charm.
gtf_file <- file.path("Zea_mays.B73_RefGen_v4.47.gtf") gtf <- read_format(gtf_file)
update gtf with intron coordinates from the exon gaps
and return the updated object ans <- construct_introns(gtf, update=TRUE)[]default
same as above, but returns only constructed introns introns <- construct_introns(gtf, update=FALSE)
But how do I save the generated gtf (introns and ans) ?
I would like to use it with bedtools but every ways i tried to save the gtf object give me a file with an excessive amount of column that is not recognise as a gtf.
Thanks in advance for your great help,
B.
The text was updated successfully, but these errors were encountered:
Hi,
Thanks for creating this super simple tool to open and modify gtfs. I used it to add the introns not annotated in my gtf (from Zea mays aka corn). Worked like a charm.
gtf_file <- file.path("Zea_mays.B73_RefGen_v4.47.gtf")
gtf <- read_format(gtf_file)
update gtf with intron coordinates from the exon gaps
and return the updated object
ans <- construct_introns(gtf, update=TRUE)[]default
same as above, but returns only constructed introns
introns <- construct_introns(gtf, update=FALSE)
But how do I save the generated gtf (introns and ans) ?
I would like to use it with bedtools but every ways i tried to save the gtf object give me a file with an excessive amount of column that is not recognise as a gtf.
Thanks in advance for your great help,
B.
The text was updated successfully, but these errors were encountered: