You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Replace {file1} with the path to your transcriptome (e.g. example_data/transcriptomes/planarian_transcriptome.fasta).
Replace {id1} with the id (e.g. pl2).
Replace {type1} with nucl.
Do similar for file2,type2,id2.
Hi, what is the exact command to enter into the command line to run blast?
I tried the following:
./map_genes.sh ./example_data/transcriptomes/planarian_transcriptome.fasta nucl pl2
./example_data/transcriptomes/hydra_transcriptome.fasta nucl hy2
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-blastdb_version version] [-max_file_sz number_of_bytes]
[-logfile File_Name] [-taxid TaxID] [-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.9.0+
Use '-help' to print detailed descriptions of command line arguments
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is missing:
String,
nucl', `prot''USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-blastdb_version version] [-max_file_sz number_of_bytes]
[-logfile File_Name] [-taxid TaxID] [-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.9.0+
Use '-help' to print detailed descriptions of command line arguments
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is missing:
String,
nucl', `prot''Thanks in advance
Esther
The text was updated successfully, but these errors were encountered: