Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error in Make Test! #83

Open
QuestionPython opened this issue Apr 24, 2017 · 1 comment · May be fixed by #177
Open

Error in Make Test! #83

QuestionPython opened this issue Apr 24, 2017 · 1 comment · May be fixed by #177

Comments

@QuestionPython
Copy link

QuestionPython commented Apr 24, 2017

$ g++ -v

Using built-in specs.
COLLECT_GCC=g++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.1-2ubuntu2' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.1 20160929 (Ubuntu 5.4.1-2ubuntu2) 

klib/test$ make

gcc -g -Wall -O2 -I.. -o kbtree_test kbtree_test.c
In file included from kbtree_test.c:10:0:
../kbtree.h:333:13: warning: ‘kb_itr_get_int’ defined but not used [-Wunused-function]
  static int kb_itr_get_##name(kbtree_##name##_t *b, const key_t * __restrict k,
             ^
../kbtree.h:372:2: note: in expansion of macro ‘__KB_ITR’
  __KB_ITR(name, key_t)
  ^
kbtree_test.c:11:1: note: in expansion of macro ‘KBTREE_INIT’
 KBTREE_INIT(int, uint32_t, kb_generic_cmp)
 ^
../kbtree.h:333:13: warning: ‘kb_itr_get_str’ defined but not used [-Wunused-function]
  static int kb_itr_get_##name(kbtree_##name##_t *b, const key_t * __restrict k,
             ^
../kbtree.h:372:2: note: in expansion of macro ‘__KB_ITR’
  __KB_ITR(name, key_t)
  ^
kbtree_test.c:12:1: note: in expansion of macro ‘KBTREE_INIT’
 KBTREE_INIT(str, str_t, kb_str_cmp)
 ^
gcc -g -Wall -O2 -I.. -o khash_keith khash_keith.c
gcc -g -Wall -O2 -I.. -o khash_keith2 khash_keith2.c
khash_keith2.c: In function ‘main’:
khash_keith2.c:32:9: warning: unused variable ‘l’ [-Wunused-variable]
  int i, l, n = 1000, ret;
         ^
gcc -g -Wall -O2 -I.. -o khash_test khash_test.c
gcc -g -Wall -O2 -I.. -o klist_test klist_test.c
gcc -g -Wall -O2 -I.. -o kseq_test kseq_test.c -lz
gcc -g -Wall -O2 -I.. -o kseq_bench kseq_bench.c -lz
gcc -g -Wall -O2 -I.. -o kseq_bench2 kseq_bench2.c -lz
In file included from kseq_bench2.c:6:0:
kseq_bench2.c: In function ‘ks_getc’:
kseq_bench2.c:7:19: warning: implicit declaration of function ‘read’ [-Wimplicit-function-declaration]
 KSTREAM_INIT(int, read, 4096)
                   ^
../kseq.h:74:14: note: in definition of macro ‘__KS_GETC’
    ks->end = __read(ks->f, ks->buf, __bufsize); \
              ^
kseq_bench2.c:7:1: note: in expansion of macro ‘KSTREAM_INIT’
 KSTREAM_INIT(int, read, 4096)
 ^
kseq_bench2.c: In function ‘main’:
kseq_bench2.c:39:3: warning: implicit declaration of function ‘close’ [-Wimplicit-function-declaration]
   close(fd);
   ^
gcc -g -Wall -O2 -I.. -o ksort_test ksort_test.c
g++ -g -Wall -O2 -I.. -o ksort_test-stl ksort_test.cc
In file included from ksort_test.cc:7:0:
ksort_test.cc: In function ‘void ks_sample_int(size_t, size_t, int*)’:
../ksort.h:276:10: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    if (k != n - pop - 1) tmp = a[k], a[k] = a[n-pop-1], a[n-pop-1] = tmp; \
          ^
../ksort.h:295:36: note: in expansion of macro ‘KSORT_INIT’
 #define KSORT_INIT_GENERIC(type_t) KSORT_INIT(type_t, type_t, ks_lt_generic)
                                    ^
ksort_test.cc:8:1: note: in expansion of macro ‘KSORT_INIT_GENERIC’
 KSORT_INIT_GENERIC(int)
 ^
ksort_test.cc: In instantiation of ‘void _RadixSort_Unsigned_PowerOf2Radix_1(_Type*, long int, _Type, long unsigned int) [with _Type = unsigned int; long unsigned int PowerOfTwoRadix = 256ul; long unsigned int Log2ofPowerOfTwoRadix = 8ul; long int Threshold = 32l]’:
ksort_test.cc:776:102:   required from here
ksort_test.cc:748:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   while( _current >= startOfBin[ nextBin ] && nextBin < numberOfBins )
                                                       ^
ksort_test.cc:750:70: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  while( endOfBin[ nextBin - 1 ] == startOfBin[ nextBin ] && nextBin < numberOfB
                                                                     ^
g++ -g -Wall -O2 -I.. -o kvec_test kvec_test.cc
gcc -g -Wall -O2 -I.. -o kmin_test kmin_test.c ../kmath.c
/tmp/cc13nLlA.o: In function `kr_normal':
/home/guest/klib/test/../kmath.c:81: undefined reference to `log'
/home/guest/klib/test/../kmath.c:81: undefined reference to `sqrt'
/tmp/cc13nLlA.o: In function `kf_lgamma':
/home/guest/klib/test/../kmath.c:309: undefined reference to `log'
/home/guest/klib/test/../kmath.c:309: undefined reference to `log'
/tmp/cc13nLlA.o: In function `_kf_gammap':
/home/guest/klib/test/../kmath.c:369: undefined reference to `log'
/home/guest/klib/test/../kmath.c:369: undefined reference to `log'
/tmp/cc13nLlA.o: In function `_kf_gammaq':
/home/guest/klib/test/../kmath.c:390: undefined reference to `log'
/tmp/cc13nLlA.o:/home/guest/klib/test/../kmath.c:390: more undefined references to `log' follow
/tmp/cc13nLlA.o: In function `kf_betai_aux':
/home/guest/klib/test/../kmath.c:432: undefined reference to `exp'
/tmp/cc13nLlA.o: In function `kf_erfc':
/home/guest/klib/test/../kmath.c:336: undefined reference to `exp'
/tmp/cc13nLlA.o: In function `_kf_gammap':
/home/guest/klib/test/../kmath.c:369: undefined reference to `exp'
/tmp/cc13nLlA.o: In function `_kf_gammaq':
/home/guest/klib/test/../kmath.c:390: undefined reference to `exp'
collect2: error: ld returned 1 exit status
Makefile:48: recipe for target 'kmin_test' failed
make: *** [kmin_test] Error 1

how fix this?

@metab0t
Copy link

metab0t commented Apr 24, 2017

adding -lm in Makefile items using kmath.c will solve the problem

seanpquinn added a commit to seanpquinn/klib that referenced this issue Nov 4, 2023
@seanpquinn seanpquinn linked a pull request Nov 4, 2023 that will close this issue
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging a pull request may close this issue.

2 participants