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DESCRIPTION
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DESCRIPTION
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Type: Package
Package: SpaceMarkers
Title: Spatial Interaction Markers
Version: 0.99.8
Authors@R: c(
person(given = "Atul", family = "Deshpande", email = "adeshpande@jhu.edu", role = c("aut", "cre"), comment = c(ORCID="0000-0001-5144-6924")),
person(given = "Ludmila", family = "Danilova", email = "ldanilo1@jhmi.edu", role = "ctb"),
person(given = "Dimitrijs", family = "Lvovs", email = "dlvovs1@jh.edu", role = "ctb")
)
BugReports: https://github.com/atuldeshpande/SpaceMarkers/issues
URL: https://github.com/atuldeshpande/SpaceMarkers
Description: Spatial transcriptomic technologies have helped to resolve the connection
between gene expression and the 2D orientation of tissues relative to each other.
However, the limited single-cell resolution makes it difficult to highlight the most
important molecular interactions in these tissues. SpaceMarkers, R/Bioconductor software,
can help to find molecular interactions, by identifying genes associated with latent space
interactions in spatial transcriptomics.
Depends:
R (>= 4.4.0)
biocViews: SingleCell, GeneExpression, Software, Spatial, Transcriptomics
Imports:
matrixStats,
matrixTests,
rstatix,
spatstat.explore,
spatstat.geom,
ape,
hdf5r,
jsonlite,
Matrix,
qvalue,
stats,
utils,
methods
Suggests:
data.table,
devtools,
dplyr,
ggplot2,
hrbrthemes,
knitr,
RColorBrewer,
cowplot,
readbitmap,
rjson,
rmarkdown,
BiocStyle,
testthat (>= 3.0.0),
viridis,
CoGAPS
VignetteBuilder:
knitr
Config/testthat/edition: 3
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
License: MIT + file LICENSE