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malaria.bib
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#url={https://books.google.es/books?id=iQCupVehIXQC},
@book{abbas2012,
title={Inmunolog{\'\i}a Celular y Molecular},
author={Abbas, A.K. and Lichtman, A.H.H. and Pillai, S.},
isbn={978-84-8086-916-4},
year={2012},
edition = {7},
publisher={Elsevier España(ES)}
}
##################### R GENERAL INFORMATION #####################
@Manual{R2016,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2016},
url = {https://www.R-project.org/},
}
@article{wickham2014tidy,
author = {Hadley Wickham},
title = {Tidy Data},
journal = {Journal of Statistical Software, Articles},
volume = {59},
number = {10},
year = {2014},
keywords = {},
abstract = {A huge amount of effort is spent cleaning data to get it ready for analysis, but there has been little research on how to make data cleaning as easy and effective as possible. This paper tackles a small, but important, component of data cleaning: data tidying. Tidy datasets are easy to manipulate, model and visualize, and have a specific structure: each variable is a column, each observation is a row, and each type of observational unit is a table. This framework makes it easy to tidy messy datasets because only a small set of tools are needed to deal with a wide range of un-tidy datasets. This structure also makes it easier to develop tidy tools for data analysis, tools that both input and output tidy datasets. The advantages of a consistent data structure and matching tools are demonstrated with a case study free from mundane data manipulation chores.},
issn = {1548-7660},
pages = {1--23},
doi = {10.18637/jss.v059.i10},
url = {https://www.jstatsoft.org/v059/i10}
}
@Book{wickham2016r4ds,
title={R for data science},
author={Wickham, Hadley and Grolemund, Garrett},
year={2016},
publisher = {Sebastopol, CA: O’Reilly.},
isbn = {978-1-4919-1039-9},
url = {http://r4ds.had.co.nz/}
}
@Manual{bookdown,
title = {bookdown: Authoring Books and Technical Documents with R Markdown},
author = {Yihui Xie},
year = {2016},
note = {R package version 0.3},
url = {https://github.com/rstudio/bookdown},
}
@article{CienciaReproducible2016,
doi = {10.7818/ecos.2016.25-2.11},
url = {http://dx.doi.org/10.7818/ECOS.2016.25-2.11},
year = {2016},
month = {aug},
publisher = {Asociacion Espa{\~{n}}ola de Ecologia Terrestre ({AEET})},
volume = {25},
number = {2},
pages = {83-92},
author = {Francisco Rodr{\'{\i}}guez-Sanchez and Antonio Jes{\'{u}}s P{\'{e}}rez-Luque and Ignasi Bartomeus and Sara Varela},
title = {Ciencia reproducible: {\textquestiondown}qu{\'{e}}, por qu{\'{e}}, c{\'{o}}mo?},
journal = {{ECOS}}
}
@Manual{Hmisc,
title = {Hmisc: Harrell Miscellaneous},
author = {Frank E {Harrell Jr} and with contributions from Charles Dupont and many others.},
year = {2016},
note = {http://biostat.mc.vanderbilt.edu/Hmisc, https://github.com/harrelfe/Hmisc},
url = {http://biostat.mc.vanderbilt.edu/wiki/Main/Hmisc},
}
@Manual{gplots,
title = {gplots: Various R Programming Tools for Plotting Data},
author = {Gregory R. Warnes and Ben Bolker and Lodewijk Bonebakker and Robert Gentleman and Wolfgang Huber Andy Liaw and Thomas Lumley and Martin Maechler and Arni Magnusson and Steffen Moeller and Marc Schwartz and Bill Venables},
year = {2016},
note = {R package version 3.0.1},
url = {https://CRAN.R-project.org/package=gplots},
}
@Manual{dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain Francois},
year = {2016},
note = {R package version 0.5.0},
url = {https://CRAN.R-project.org/package=dplyr},
}
@Book{ggplot2,
author = {Hadley Wickham},
title = {ggplot2: Elegant Graphics for Data Analysis},
publisher = {Springer-Verlag New York},
year = {2009},
isbn = {978-0-387-98140-6},
url = {http://ggplot2.org},
}
@Manual{ggrepel,
title = {ggrepel: Repulsive Text and Label Geoms for 'ggplot2'},
author = {Kamil Slowikowski},
note = {R package version 0.5.1},
url = {http://github.com/slowkow/ggrepel},
}
@Manual{Rmisc,
title = {Rmisc: Rmisc: Ryan Miscellaneous},
author = {Ryan M. Hope},
year = {2013},
note = {R package version 1.5},
url = {https://CRAN.R-project.org/package=Rmisc},
}
@Manual{rmarkdown,
title = {rmarkdown: Dynamic Documents for R},
author = {JJ Allaire and Joe Cheng and Yihui Xie and Jonathan McPherson and Winston Chang and Jeff Allen and Hadley Wickham and Aron Atkins and Rob Hyndman},
note = {R package version 1.0.9010},
url = {http://rmarkdown.rstudio.com},
}
@article{knitr,
title={knitr: A general-purpose Tool for dynamic report generation in R},
author={Xie, Yihui},
journal={R package version},
volume={1},
number={1},
year={2013},
url = {http://yihui.name/knitr/}
}
@Manual{rstudio,
title = {RStudio: Integrated Development Environment for R},
author = {{RStudio Team}},
organization = {RStudio, Inc.},
address = {Boston, MA},
year = {2015},
url = {http://www.rstudio.com/},
}
################################# ABOUT MALARIA ###############################
@article{plasmodb,
author = {Aurrecoechea, Cristina and Brestelli, John and Brunk, Brian P. and Dommer, Jennifer and Fischer, Steve and Gajria, Bindu and Gao, Xin and Gingle, Alan and Grant, Greg and Harb, Omar S. and Heiges, Mark and Innamorato, Frank and Iodice, John and Kissinger, Jessica C. and Kraemer, Eileen and Li, Wei and Miller, John A. and Nayak, Vishal and Pennington, Cary and Pinney, Deborah F. and Roos, David S. and Ross, Chris and Stoeckert, Christian J., Jr. and Treatman, Charles and Wang, Haiming},
title = "{PlasmoDB: a functional genomic database for malaria parasites}",
journal = {Nucleic Acids Research},
volume = {37},
number = {suppl_1},
pages = {D539-D543},
year = {2008},
month = {10},
abstract = "{PlasmoDB (http://PlasmoDB.org) is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale. PlasmoDB belongs to a family of genomic resources that are housed under the EuPathDB (http://EuPathDB.org) Bioinformatics Resource Center (BRC) umbrella. The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories—annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution. Data in PlasmoDB can be queried by selecting the data of interest from a query grid or drop down menus. Various results can then be combined with each other on the query history page. Search results can be downloaded with associated functional data and registered users can store their query history for future retrieval or analysis.}",
issn = {0305-1048},
doi = {10.1093/nar/gkn814},
url = {https://doi.org/10.1093/nar/gkn814},
eprint = {https://academic.oup.com/nar/article-pdf/37/suppl\_1/D539/3297210/gkn814.pdf},
}
################################# VIVAX MUNDO
@book{WHO2016world,
title={World malaria report 2016},
author={WHO},
year={2016},
isbn={978-92-4-151171-1},
url={http://www.who.int/malaria/publications/world-malaria-report-2016/report/en/},
volume={13},
publisher={Geneva: World Health Organization}
}
@article{howes2016global,
title={Global epidemiology of Plasmodium vivax},
author={Howes, Rosalind E and Battle, Katherine E and Mendis, Kamini N and Smith, David L and Cibulskis, Richard E and Baird, J Kevin and Hay, Simon I},
journal={The American Journal of Tropical Medicine and Hygiene},
volume={95},
number={6 Suppl},
pages={15-34},
year={2016},
publisher={ASTMH},
url = {http://www.ajtmh.org/content/journals/10.4269/ajtmh.16-0141},
doi = {10.4269/ajtmh.16-0141}
}
@Book{path2011,
author = {PATH},
title = {Staying the Course? Malaria Research and Development in a Time of Economic Uncertainty},
publisher = {Seattle, WA: PATH},
year = {2011},
isbn = {978-0-9829522-0-7},
url = {www.malariavaccine.org/files/RD-report-June2011.pdf}
}
@article{rahimi2014meta,
title={Severe vivax malaria: a systematic review and meta-analysis of clinical studies since 1900},
author={Rahimi, Bilal Ahmad and Thakkinstian, Ammarin and White, Nicholas J and Sirivichayakul, Chukiat and Dondorp, Arjen M and Chokejindachai, Watcharee},
journal={Malaria journal},
volume={13},
number={1},
pages={481},
year={2014},
publisher={BioMed Central},
issn={1475-2875},
doi={10.1186/1475-2875-13-481},
url={http://dx.doi.org/10.1186/1475-2875-13-481}
}
@article{baird2013,
title={Evidence and implications of mortality associated with acute Plasmodium vivax malaria},
author={Baird, J Kevin},
journal = {Clinical Microbiology Reviews},
volume={26},
number={1},
pages={36-57},
year={2013},
doi = {10.1128/CMR.00074-12},
URL = {http://cmr.asm.org/content/26/1/36.abstract},
eprint = {http://cmr.asm.org/content/26/1/36.full.pdf+html},
publisher={Am Soc Microbiol}
}
@article{jagannathan2014,
doi = {10.1371/journal.ppat.1003864},
author = {Jagannathan, Prasanna AND Eccles-James, Ijeoma AND Bowen, Katherine AND Nankya, Felistas AND Auma, Ann AND Wamala, Samuel AND Ebusu, Charles AND Muhindo, Mary K. AND Arinaitwe, Emmanuel AND Briggs, Jessica AND Greenhouse, Bryan AND Tappero, Jordan W. AND Kamya, Moses R. AND Dorsey, Grant AND Feeney, Margaret E.},
journal = {PLOS Pathogens},
publisher = {Public Library of Science},
title = {IFN$\gamma$/IL-10 Co-producing Cells Dominate the CD4 Response to Malaria in Highly Exposed Children},
year = {2014},
month = {01},
volume = {10},
url = {https://doi.org/10.1371/journal.ppat.1003864},
pages = {1-14},
abstract = {Although evidence suggests that T cells are critical for immunity to malaria, reliable T cell correlates of exposure to and protection from malaria among children living in endemic areas are lacking. We used multiparameter flow cytometry to perform a detailed functional characterization of malaria-specific T cells in 78 four-year-old children enrolled in a longitudinal cohort study in Tororo, Uganda, a highly malaria-endemic region. More than 1800 episodes of malaria were observed in this cohort, with no cases of severe malaria. We quantified production of IFNγ, TNFα, and IL-10 (alone or in combination) by malaria-specific T cells, and analyzed the relationship of this response to past and future malaria incidence. CD4+ T cell responses were measurable in nearly all children, with the majority of children having CD4+ T cells producing both IFNγ and IL-10 in response to malaria-infected red blood cells. Frequencies of IFNγ/IL10 co-producing CD4+ T cells, which express the Th1 transcription factor T-bet, were significantly higher in children with ≥2 prior episodes/year compared to children with <2 episodes/year (P<0.001) and inversely correlated with duration since malaria (Rho = −0.39, P<0.001). Notably, frequencies of IFNγ/IL10 co-producing cells were not associated with protection from future malaria after controlling for prior malaria incidence. In contrast, children with <2 prior episodes/year were significantly more likely to exhibit antigen-specific production of TNFα without IL-10 (P = 0.003). While TNFα-producing CD4+ T cells were not independently associated with future protection, the absence of cells producing this inflammatory cytokine was associated with the phenotype of asymptomatic infection. Together these data indicate that the functional phenotype of the malaria-specific T cell response is heavily influenced by malaria exposure intensity, with IFNγ/IL10 co-producing CD4+ T cells dominating this response among highly exposed children. These CD4+ T cells may play important modulatory roles in the development of antimalarial immunity.},
number = {1},
}
@article{schofield2006toll,
title={Clinical immunity to malaria},
author={Schofield, Louis and Mueller, Ivo},
journal={Current molecular medicine},
volume={6},
number={2},
pages={205--221},
year={2006},
publisher={Bentham Science Publishers},
doi={10.2174/156652406776055221}
}
@article{coban2005toll,
author = {Coban , Cevayir and Ishii , Ken J. and Kawai , Taro and Hemmi , Hiroaki and Sato , Shintaro and Uematsu , Satoshi and Yamamoto , Masahiro and Takeuchi , Osamu and Itagaki , Sawako and Kumar , Nirbhay and Horii , Toshihiro and Akira , Shizuo },
title = "{Toll-like receptor 9 mediates innate immune activation by the malaria pigment hemozoin }",
journal = {Journal of Experimental Medicine},
volume = {201},
number = {1},
pages = {19-25},
year = {2005},
month = {01},
abstract = "{Malaria parasites within red blood cells digest host hemoglobin into a hydrophobic heme polymer, known as hemozoin (HZ), which is subsequently released into the blood stream and then captured by and concentrated in the reticulo-endothelial system. Accumulating evidence suggests that HZ is immunologically active, but the molecular mechanism(s) through which HZ modulates the innate immune system has not been elucidated. This work demonstrates that HZ purified from Plasmodium falciparum is a novel non-DNA ligand for Toll-like receptor (TLR)9. HZ activated innate immune responses in vivo and in vitro, resulting in the production of cytokines, chemokines, and up-regulation of costimulatory molecules. Such responses were severely impaired in TLR9−/− and myeloid differentiation factor 88 (MyD88)−/−, but not in TLR2, TLR4, TLR7, or Toll/interleukin 1 receptor domain–containing adaptor-inducing interferon β−/− mice. Synthetic HZ, which is free of the other contaminants, also activated innate immune responses in vivo in a TLR9-dependent manner. Chloroquine (CQ), an antimalarial drug, abrogated HZ-induced cytokine production. These data suggest that TLR9-mediated, MyD88-dependent, and CQ-sensitive innate immune activation by HZ may play an important role in malaria parasite–host interactions. }",
issn = {0022-1007},
doi = {10.1084/jem.20041836},
url = {https://doi.org/10.1084/jem.20041836},
eprint = {https://rupress.org/jem/article-pdf/201/1/19/1152529/jem201119.pdf},
}
@article{galinski1992rbp,
title={A reticulocyte-binding protein complex of Plasmodium vivax merozoites},
author={Galinski, Mary R and Medina, Claudia Corredor and Ingravallo, Paul and Barnwell, John W},
journal={Cell},
volume={69},
number={7},
pages={1213--1226},
year={1992},
publisher={Elsevier},
doi={10.1016/0092-8674(92)90642-P}
}
@article{portillo2001vir,
doi = {10.1038/35071118},
url = {https://doi.org/10.1038/35071118},
year = {2001},
month = apr,
publisher = {Springer Science and Business Media {LLC}},
volume = {410},
number = {6830},
pages = {839--842},
author = {Hernando A. del Portillo and Carmen Fernandez-Becerra and Sharen Bowman and Karen Oliver and Martin Preuss and Cecilia P. Sanchez and Nick K. Schneider and Juan M. Villalobos and Marie-Adele Rajandream and David Harris and Luiz H. Pereira da Silva and Bart Barrell and Michael Lanzer},
title = {A superfamily of variant genes encoded in the subtelomeric region of Plasmodium vivax},
journal = {Nature}
}
@article{cohen1961,
title={Gamma-globulin and acquired immunity to human malaria},
author={Cohen, S and McGregor, IA and Carrington, S},
journal={Nature},
volume={192},
number={4804},
pages={733--737},
year={1961},
publisher={Springer},
doi={10.1038/192733a0}
}
@article{sabchareon1991,
title={Parasitologic and clinical human response to immunoglobulin administration in falciparum malaria},
author={Sabchareon, Arunee and Burnouf, Thierry and Ouattara, Daniel and Attanath, Phanorsi and Bouharoun-Tayoun, Hasnaa and Chantavanich, Pornthep and Foucault, Catherine and Chongsuphajaisiddhi, Tan and Druilhe, Pierre},
journal={The American journal of tropical medicine and hygiene},
volume={45},
number={3},
pages={297--308},
year={1991},
publisher={ASTMH},
doi={10.4269/ajtmh.1991.45.297},
url={http://www.ajtmh.org/content/journals/10.4269/ajtmh.1991.45.297}
}
################################# VIVAX EXPERIMENTAL INFECTION
@article{arevalo2014,
doi = {10.1371/journal.pone.0099754},
url = {https://doi.org/10.1371/journal.pone.0099754},
year = {2014},
month = jun,
publisher = {Public Library of Science ({PLoS})},
volume = {9},
number = {6},
pages = {e99754},
author = {Myriam Ar{\'{e}}valo-Herrera and David A. Forero-Pe{\~{n}}a and Kelly Rubiano and Jos{\'{e}} G{\'{o}}mez-Hincapie and Nora L. Mart{\'{\i}}nez and Mary Lopez-Perez and Ang{\'{e}}lica Castellanos and Nora C{\'{e}}spedes and Ricardo Palacios and Jos{\'{e}} Mill{\'{a}}n O{\~{n}}ate and S{\'{o}}crates Herrera},
editor = {Aric Gregson},
title = {Plasmodium vivax Sporozoite Challenge in Malaria-Naïve and Semi-Immune Colombian Volunteers},
journal = {{PLoS} {ONE}}
}
################################# VIVAX PERU
@article{rosas2016peru,
doi = {10.4269/ajtmh.16-0268},
url = {https://doi.org/10.4269/ajtmh.16-0268},
year = {2016},
month = oct,
publisher = {American Society of Tropical Medicine and Hygiene},
volume = {95},
number = {6 Suppl},
pages = {133--144},
author = {Angel Rosas-Aguirre and Dionicia Gamboa and Paulo Manrique and Jan E. Conn and Marta Moreno and Andres G. Lescano and Juan F. Sanchez and Hugo Rodriguez and Hermann Silva and Alejandro Llanos-Cuentas and Joseph M. Vinetz},
title = {Epidemiology of Plasmodium vivax Malaria in Peru},
journal = {The American Journal of Tropical Medicine and Hygiene}
}
@article{accelerate2016,
author = "Quispe, Antonio and Llanos-Cuentas, Alejandro and Rodriguez, Hugo and Clendenes, Martin and Cabezas, Cesar and Leon, Luis M. and Chuquiyauri, Raul and Moreno, Marta and Kaslow, David C. and Grogl, Max and Herrera, Sócrates and Magill, Alan J. and Kosek, Margaret and Vinetz, Joseph M. and Lescano, Andres G. and Gotuzzo, Eduardo",
title = "Accelerating to Zero: Strategies to Eliminate Malaria in the {Peruvian Amazon}",
journal = "The American Journal of Tropical Medicine and Hygiene",
year = "2016",
volume = "94",
number = "6",
eid = ,
pages = "1200-1207",
url = "http://www.ajtmh.org/content/journals/10.4269/ajtmh.15-0369",
doi = "10.4269/ajtmh.15-0369"
}
@article{hotspots2015,
doi = {10.1371/journal.pone.0137458},
url = {https://doi.org/10.1371/journal.pone.0137458},
year = {2015},
month = sep,
publisher = {Public Library of Science ({PLoS})},
volume = {10},
number = {9},
pages = {e0137458},
author = {Angel Rosas-Aguirre and Niko Speybroeck and Alejandro Llanos-Cuentas and Anna Rosanas-Urgell and Gabriel Carrasco-Escobar and Hugo Rodriguez and Dionicia Gamboa and Juan Contreras-Mancilla and Freddy Alava and Irene S. Soares and Edmond Remarque and Umberto D{\textasciiacute}Alessandro and Annette Erhart},
editor = {Luzia Helena Carvalho},
title = {Hotspots of Malaria Transmission in the Peruvian Amazon: Rapid Assessment through a Parasitological and Serological Survey},
journal = {{PLOS} {ONE}}
}
@article{gagnon2002enso,
title={The {El Ni{\~{n}}o} southern oscillation and malaria epidemics in {South America}},
author={Gagnon, Alexandre S and Smoyer-Tomic, Karen E and Bush, Andrew B},
journal={International Journal of Biometeorology},
volume={46},
number={2},
pages={81--89},
year={2002},
publisher={Springer},
doi={10.1007/s00484-001-0119-6}
}
@article{llanoschea2015,
author = "Llanos-Chea, Fiorella and Martínez, Dalila and Rosas, Angel and Samalvides, Frine and Vinetz, Joseph M. and Llanos-Cuentas, Alejandro",
title = "Characteristics of Travel-Related Severe Plasmodium vivax and Plasmodium falciparum Malaria in Individuals Hospitalized at a Tertiary Referral Center in Lima, {Peru}",
journal = "The American Journal of Tropical Medicine and Hygiene",
year = "2015",
volume = "93",
number = "6",
eid = ,
pages = "1249-1253",
url = "http://www.ajtmh.org/content/journals/10.4269/ajtmh.14-0652",
doi = "10.4269/ajtmh.14-0652"
}
@book{factores2001,
title={Factores de riesgo de la malaria grave en el Per{\'u}},
author={MINSA},
year={2001},
isbn={9972-820-24-6},
url={http://bvs.minsa.gob.pe/local/minsa/1772.pdf},
publisher={{Ministerio de Salud}: Proyecto Vig{\'i}a (MINSA-USAID)}
}
@book{norma2007,
title={Norma Técnica de Salud para la atención de la Malaria y Malaria Grave en el Per{\'u}},
author={MINSA},
year={2007},
isbn={RM-076-2007},
publisher={{Ministerio de Salud}},
url={http://www.minsa.gob.pe/portada/esnemo_normatividad.asp},
}
@article{griffing2013history,
title={The history of 20 th century malaria control in {Peru}},
author={Griffing, Sean M and Gamboa, Dionicia and Udhayakumar, Venkatachalam},
journal={Malaria journal},
volume={12},
number={1},
pages={303},
year={2013},
publisher={BioMed Central},
doi={10.1186/1475-2875-12-303},
url={https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-12-303}
}
@article{soto2017spatio,
doi = {10.1038/srep40350},
url = {https://doi.org/10.1038/srep40350},
year = {2017},
month = jan,
publisher = {Springer Science and Business Media {LLC}},
volume = {7},
number = {1},
author = {Veronica Soto-Calle and Angel Rosas-Aguirre and Alejandro Llanos-Cuentas and Emmanuel Abatih and Redgi DeDeken and Hugo Rodriguez and Anna Rosanas-Urgell and Dionicia Gamboa and Umberto D{\textasciiacute}Alessandro and Annette Erhart and Niko Speybroeck},
title = {Spatio-temporal analysis of malaria incidence in the Peruvian Amazon Region between 2002 and 2013},
journal = {Scientific Reports}
}
################################# SEVERE DISEASE
@InProceedings{rainbow2016,
author = {WHO},
title = {Malaria Vaccine Rainbow Tables},
organization = {World Health Organization. Accessed: 15-june-2017},
note = {Accessed: 15-june-2017},
year = {2016},
url = {http://www.who.int/vaccine_research/links/Rainbow/en/index.html}
}
@article{Moreno2013,
author = {Moreno, Alberto and Cabrera-Mora, Monica and Garcia, AnaPatricia and Orkin, Jack and Strobert, Elizabeth and Barnwell, John W. and Galinski, Mary R.},
title = {Plasmodium coatneyi in Rhesus Macaques Replicates the Multisystemic Dysfunction of Severe Malaria in Humans},
volume = {81},
number = {6},
pages = {1889-1904},
year = {2013},
doi = {10.1128/IAI.00027-13},
URL = {http://iai.asm.org/content/81/6/1889.abstract},
eprint = {http://iai.asm.org/content/81/6/1889.full.pdf+html},
journal = {Infection and Immunity}
}
@article{WHO2014severe,
author= {WHO},
doi = {10.1111/tmi.12313_2},
url = {http://dx.doi.org/10.1111/tmi.12313_2},
year = {2014},
month = {sep},
publisher = {Wiley-Blackwell},
volume = {19},
pages = {7-131},
title = {Severe Malaria},
journal = {Trop Med Int Health}
}
@article{quispe2014,
title={Plasmodium vivax hospitalizations in a monoendemic malaria region: severe vivax malaria?},
author={Quispe, Antonio and Pozo, Edwar and Guerrero, Edith and Durand, Salom{\'o}n and Baldeviano, G Christian and Edgel, Kimberly A and Graf, Paul CF and Lescano, Andres G},
journal={The American journal of tropical medicine and hygiene},
volume={91},
number={1},
pages={11-17},
year={2014},
publisher={ASTMH},
url = {http://www.ajtmh.org/content/journals/10.4269/ajtmh.12-0610},
doi = {10.4269/ajtmh.12-0610}
}
@article{wassmer2015,
title={Investigating the pathogenesis of severe malaria: a multidisciplinary and cross-geographical approach},
author={Wassmer, Samuel C and Taylor, Terrie E and Rathod, Pradipsinh K and Mishra, Saroj K and Mohanty, Sanjib and Arevalo-Herrera, Myriam and Duraisingh, Manoj T and Smith, Joseph D},
journal={The American journal of tropical medicine and hygiene},
volume={93},
number={3 Suppl},
pages={42-56},
year={2015},
publisher={ASTMH},
url = {http://www.ajtmh.org/content/journals/10.4269/ajtmh.14-0841},
doi = {10.4269/ajtmh.14-0841}
}
@article{barber2015,
title={Parasite biomass-related inflammation, endothelial activation, microvascular dysfunction and disease severity in vivax malaria},
author={Barber, Bridget E and William, Timothy and Grigg, Matthew J and Parameswaran, Uma and Piera, Kim A and Price, Ric N and Yeo, Tsin W and Anstey, Nicholas M},
journal={PLoS Pathog},
volume={11},
number={1},
year={2015},
month = {01},
volume = {11},
url = {http://dx.doi.org/10.1371%2Fjournal.ppat.1004558},
doi = {10.1371/journal.ppat.1004558},
pages = {1-13},
publisher={Public Library of Science}
}
@InProceedings{baldevi2013,
author = {Baldeviano, G. Christian and Leiva, Karina P. and Quispe, Antonio M. and Ventocilla, Julio and Tapia, L. Lorena and Durand, Salomon and Santolalla, Meddly L. and Ricopa, Leonila and Campos, Karen and Sihuincha , Moises and Smith, Edward S. and Edgel, Kimberly A. and Lescano, Andres G.},
title = {Serum Markers of Severe clinical complications during Plasmodium vivax malaria monoinfections in the {Peruvian Amazon} basin},
crossref = {},
key = {},
booktitle = {Abstract Book of the ASTMH 62nd Annual Meeting, Nov. 13--17, Washington {D.C.}, United States},
pages = {340},
year = {2013},
editor = {},
volume = {},
number = {1120},
series = {},
address = {},
month = {},
organization = {},
publisher = {},
note = {},
annote = {},
url = {http://www.astmh.org/ASTMH/media/Documents/AbstractBook2013Final.pdf}
}
@InProceedings{smith2013,
author = {Smith-Nuñez, Edward S. and Durand, Salomon and Baldeviano, G. Christian and Quispe, Antonio M. and Jacquerioz, Frederique and Sihuincha, Moises and Celis, Juan C. and Tapia, Lorena and Campos, Karen and Edgel, Kimberly A. and Lescano, andres G.},
title = {WHO criteria for severe malaria in identifying severe vivax malaria: Preliminary data from a study in {Iquitos}, {Peru}},
crossref = {},
key = {},
booktitle = {Abstract Book of the ASTMH 62nd Annual Meeting, Nov. 13--17, Washington {D.C.}, United States},
pages = {398},
year = {2013},
editor = {},
volume = {},
number = {},
series = {},
address = {},
month = {},
organization = {},
publisher = {},
note = {},
annote = {},
url = {http://www.astmh.org/ASTMH/media/Documents/AbstractBook2013Final.pdf}
}
@article{reyburn2015,
doi = {10.1001/jama.293.12.1461},
url = {https://doi.org/10.1001/jama.293.12.1461},
year = {2005},
month = mar,
publisher = {American Medical Association ({AMA})},
volume = {293},
number = {12},
pages = {1461},
author = {Hugh Reyburn},
title = {Association of Transmission Intensity and Age With Clinical Manifestations and Case Fatality of Severe Plasmodium falciparum Malaria},
journal = {{JAMA}}
}
@article{baird2009,
title={Severe and fatal vivax malaria challenges 'benign tertian malaria' dogma},
author={Baird, J Kevin},
journal={Annals of tropical paediatrics},
volume={29},
number={4},
pages={251--252},
year={2009},
publisher={Maney},
doi={10.1179/027249309X12547917868808}
}
@article{baldevi2016,
author = {Halsey, Eric S. and Baldeviano, G. Christian and Edgel, Kimberly A. and Vilcarromero, Stalin and Sihuincha, Moises and Lescano, Andres G.},
journal = {PLOS Neglected Tropical Diseases},
publisher = {Public Library of Science},
title = {Symptoms and Immune Markers in Plasmodium/Dengue Virus Co-infection Compared with Mono-infection with Either in {Peru}},
year = {2016},
month = {04},
volume = {10},
url = {https://doi.org/10.1371/journal.pntd.0004646},
pages = {1-16},
number = {4},
doi = {10.1371/journal.pntd.0004646}
}
@article{okoko2003preg,
title={The epidemiology and consequences of maternal malaria: a review of immunological basis},
author={Okoko, Brown J and Enwere, Godwin and Ota, MOC},
journal={Acta tropica},
volume={87},
number={2},
pages={193--205},
year={2003},
publisher={Elsevier}
}
@article{rogerson2007preg,
title={Malaria in pregnancy: pathogenesis and immunity},
author={Rogerson, Stephen J and Hviid, Lars and Duffy, Patrick E and Leke, Rose FG and Taylor, Diane W},
journal={The Lancet infectious diseases},
volume={7},
number={2},
pages={105--117},
year={2007},
publisher={Elsevier},
doi={10.1016/S1473-3099(07)70022-1}
}
@article{rts2015,
title={Efficacy and safety of {RTS,S/AS01} malaria vaccine with or without a booster dose in infants and children in Africa: final results of a phase 3, individually randomised, controlled trial},
author={{{RTS,S} Clinical Trials Partnership}},
journal={The Lancet},
volume={386},
number={9988},
pages={31--45},
year={2015},
publisher={Elsevier},
url={http://www.thelancet.com/journals/lancet/article/PIIS0140-6736(15)60721-8/abstract},
doi={10.1016/S0140-6736(15)60721-8}
}
@article{kochar2009,
title={Severe Plasmodium vivax malaria: a report on serial cases from Bikaner in northwestern India},
author={Kochar, Dhanpat K and Das, Ashish and Kochar, Sanjay K and Saxena, Vishal and Sirohi, Parmendra and Garg, Shilpi and Kochar, Abhishek and Khatri, Mahesh P and Gupta, Vikas},
journal={The American journal of tropical medicine and hygiene},
volume={80},
number={2},
pages={194--198},
year={2009},
publisher={ASTMH},
doi={10.4269/ajtmh.2009.80.194},
url={http://www.ajtmh.org/content/journals/10.4269/ajtmh.2009.80.194#html_fulltext}
}
@article{alexandre2010,
title={Severe Plasmodium vivax malaria, {Brazilian Amazon}},
author={Alexandre, M{\'a}rcia A and Ferreira, Cynthia O and Siqueira, Andr{\'e} M and Magalhaes, Belisa L and Mourao, Maria Paula G and Lacerda, Marcus V and Alecrim, Maria das Gra{\c{c}}as C},
journal={Emerging infectious diseases},
volume={16},
number={10},
pages={1611},
year={2010},
publisher={Centers for Disease Control and Prevention},
url={https://wwwnc.cdc.gov/eid/article/16/10/10-0685_article},
doi={10.3201/eid1610.100685}
}
################################# HOST IMMUNITY
@article{Doolan2009age,
author = {Doolan, Denise L. and Dobaño, Carlota and Baird, J. Kevin},
title = {Acquired Immunity to Malaria},
volume = {22},
number = {1},
pages = {13-36},
year = {2009},
doi = {10.1128/CMR.00025-08},
URL = {http://cmr.asm.org/content/22/1/13.abstract},
eprint = {http://cmr.asm.org/content/22/1/13.full.pdf+html},
journal = {Clinical Microbiology Reviews}
}
@article{Stanisic2015,
author = {Stanisic, Danielle I. and Fowkes, Freya J. I. and Koinari, Melanie and Javati, Sarah and Lin, Enmoore and Kiniboro, Benson and Richards, Jack S. and Robinson, Leanne J. and Schofield, Louis and Kazura, James W. and King, Christopher L. and Zimmerman, Peter and Felger, Ingrid and Siba, Peter M. and Mueller, Ivo and Beeson, James G.},
title = {Acquisition of Antibodies against Plasmodium falciparum Merozoites and Malaria Immunity in Young Children and the Influence of Age, Force of Infection, and Magnitude of Response},
volume = {83},
number = {2},
pages = {646-660},
year = {2015},
doi = {10.1128/IAI.02398-14},
URL = {http://iai.asm.org/content/83/2/646.abstract},
eprint = {http://iai.asm.org/content/83/2/646.full.pdf+html},
journal = {Infection and Immunity}
}
@article{cutts2014meta,
title={Immunological markers of Plasmodium vivax exposure and immunity: a systematic review and meta-analysis},
author={Cutts, Julia C and Powell, Rosanna and Agius, Paul A and Beeson, James G and Simpson, Julie A and Fowkes, Freya JI},
journal={BMC medicine},
volume={12},
number={1},
pages={150},
year={2014},
publisher={BioMed Central},
issn={1741-7015},
doi={10.1186/s12916-014-0150-1},
url={http://dx.doi.org/10.1186/s12916-014-0150-1}
}
@article{arevalo2016,
title={Antibody profiling in Na{\"\i}ve and semi-immune individuals experimentally challenged with Plasmodium vivax sporozoites},
author={Ar{\'e}valo-Herrera, Myriam and Lopez-Perez, Mary and Dotsey, Emmanuel and Jain, Aarti and Rubiano, Kelly and Felgner, Philip L and Davies, D Huw and Herrera, S{\'o}crates},
journal = {PLOS Neglected Tropical Diseases},
publisher = {Public Library of Science},
year = {2016},
month = {03},
volume = {10},
url = {http://dx.doi.org/10.1371%2Fjournal.pntd.0004563},
pages = {1-15},
number = {3},
doi = {10.1371/journal.pntd.0004563}
}
############################ AB RESPONSE PROFILE USING PROTEIN MICROARRAY ##############################
############################ REVIEWS on APPROACH to PROBLEM via TECHNOLOGY
@article{elliott2014,
title={Research priorities for the development and implementation of serological tools for malaria surveillance},
author={Elliott, Salenna R and Fowkes, FJ and Richards, Jack S and Reiling, Linda and Drew, Damien R and Beeson, James G},
journal={F1000Prime Rep},
volume={6},
pages={100},
year={2014},
doi={10.12703/P6-100}
}
@article{sepulveda2015,
doi = {10.1155/2015/738030},
url = {http://dx.doi.org/10.1155/2015/738030},
year = {2015},
publisher = {Hindawi Publishing Corporation},
volume = {2015},
pages = {1--21},
author = {Nuno Sep{\'{u}}lveda and Gillian Stresman and Michael T. White and Chris J. Drakeley},
title = {Current Mathematical Models for Analyzing Anti-Malarial Antibody Data with an Eye to Malaria Elimination and Eradication},
journal = {Journal of Immunology Research}
}
@article{Davies2015Large,
doi = {10.1016/j.vaccine.2015.09.059},
url = {http://dx.doi.org/10.1016/j.vaccine.2015.09.059},
year = {2015},
month = {dec},
publisher = {Elsevier {BV}},
volume = {33},
number = {52},
pages = {7496-7505},
author = {D. Huw Davies and Patrick Duffy and Jean-Luc Bodmer and Philip L. Felgner and Denise L. Doolan},
title = {Large screen approaches to identify novel malaria vaccine candidates},
journal = {Vaccine}
}
@article{immunomics2016,
title={Immunomics: a 21st century approach to vaccine development for complex pathogens},
author={De Sousa, Karina P and Doolan, Denise L},
journal={Parasitology},
volume={143},
number={02},
pages={236-244},
year={2016},
publisher={Cambridge Univ Press},
doi={10.1017/S0031182015001079}
}
@article{sette2005,
title={A roadmap for the immunomics of category {A--C} pathogens},
author={Sette, Alessandro and Fleri, Ward and Peters, Bjoern and Sathiamurthy, Muthuraman and Bui, Huynh-Hoa and Wilson, Stephen},
journal={Immunity},
volume={22},
number={2},
pages={155--161},
year={2005},
publisher={Elsevier},
doi={10.1016/j.immuni.2005.01.009}
}
@article{carmona2015peptide,
author = {Carmona, Santiago J. and Nielsen, Morten and Schafer-Nielsen, Claus and Mucci, Juan and Altcheh, Jaime and Balouz, Virginia and Tekiel, Valeria and Frasch, Alberto C. and Campetella, Oscar and Buscaglia, Carlos A. and Agüero, Fernán},
title = {Towards High-throughput Immunomics for Infectious Diseases: Use of Next-generation Peptide Microarrays for Rapid Discovery and Mapping of Antigenic Determinants},
volume = {14},
number = {7},
pages = {1871-1884},
year = {2015},
doi = {10.1074/mcp.M114.045906},
URL = {http://www.mcponline.org/content/14/7/1871.abstract},
eprint = {http://www.mcponline.org/content/14/7/1871.full.pdf+html},
journal = {Molecular & Cellular Proteomics}
}
############################ TECHNOLOGY DETAILS
@article{Driguez2015,
title={Protein microarrays for parasite antigen discovery},
author={Driguez, Patrick and Doolan, Denise L and Molina, Douglas M and Loukas, Alex and Trieu, Angela and Felgner, Phil L and McManus, Donald P},
journal={Parasite genomics protocols},
pages={221--233},
year={2015},
publisher={Springer New York},
doi={10.1007/978-1-4939-1438-8_13}
}
@Manual{adiinc,
title = {{Antigen Discovery Incorporated}},
author = {Xiaowu Liang and Angela Yee and Joe Campo and Gary Hermanson and Arlo Randall and Philip L. Felgner},
year={2004},
note = {1 Technology Dr., Suite E309. Irvine, CA 92618},
url = {www.antigendiscovery.com},
}
############################ HISTORY on TECHNOLOGY EVOLUTION
############################ MAILESTONES IN AB PROFILES
@article{Liang2002,
author = {Liang, Xiaowu and Teng, Andy and Braun, Dawn M. and Felgner, Jiin and Wang, Yan and Baker, Scott I. and Chen, Shizong and Zelphati, Olivier and Felgner, Philip L.},
title = {Transcriptionally Active Polymerase Chain Reaction (TAP): HIGH THROUGHPUT GENE EXPRESSION USING GENOME SEQUENCE DATA},
volume = {277},
number = {5},
pages = {3593-3598},
year = {2002},
doi = {10.1074/jbc.M110652200},
URL = {http://www.jbc.org/content/277/5/3593.abstract},
eprint = {http://www.jbc.org/content/277/5/3593.full.pdf+html},
journal = {Journal of Biological Chemistry}
}
@article {Doolan2003tcell,
author = {Doolan, D. L. and Aguiar, J. C. and Weiss, W. R. and Sette, A. and Felgner, P. L. and Regis, D. P. and Quinones-Casas, P. and Yates, J. R. and Blair, P. L. and Richie, T. L. and Hoffman, S. L. and Carucci, D. J.},
title = {Utilization of genomic sequence information to develop malaria vaccines},
volume = {206},
number = {21},
pages = {3789--3802},
year = {2003},
doi = {10.1242/jeb.00615},
publisher = {The Company of Biologists Ltd},
issn = {0022-0949},
URL = {http://jeb.biologists.org/content/206/21/3789},
eprint = {http://jeb.biologists.org/content/206/21/3789.full.pdf},
journal = {Journal of Experimental Biology}
}
@article{Doolan2003pre,
author = {Doolan, Denise L. and Southwood, Scott and Freilich, Daniel A. and Sidney, John and Graber, Norma L. and Shatney, Lori and Bebris, Lolita and Florens, Laurence and Dobano, Carlota and Witney, Adam A. and Appella, Ettore and Hoffman, Stephen L. and Yates, John R. and Carucci, Daniel J. and Sette, Alessandro},
title = {Identification of Plasmodium falciparum antigens by antigenic
analysis of genomic and proteomic data},
volume = {100},
number = {17},
pages = {9952-9957},
year = {2003},
doi = {10.1073/pnas.1633254100},
URL = {http://www.pnas.org/content/100/17/9952.abstract},
eprint = {http://www.pnas.org/content/100/17/9952.full.pdf},
journal = {Proceedings of the National Academy of Sciences}
}
@article{Davies2005high,
author = {Davies, D. Huw and Liang, Xiaowu and Hernandez, Jenny E. and Randall, Arlo and Hirst, Siddiqua and Mu, Yunxiang and Romero, Kimberly M. and Nguyen, Toai T. and Kalantari-Dehaghi, Mina and Crotty, Shane and Baldi, Pierre and Villarreal, Luis P. and Felgner, Philip L.},
title = {Profiling the humoral immune response to infection by using proteome microarrays: High-throughput vaccine and diagnostic antigen discovery},
volume = {102},
number = {3},
pages = {547-552},
year = {2005},
doi = {10.1073/pnas.0408782102},
URL = {http://www.pnas.org/content/102/3/547.abstract},
eprint = {http://www.pnas.org/content/102/3/547.full.pdf},
journal = {Proceedings of the National Academy of Sciences of the United States of America}
}
@article {doolan2008,
author = {Doolan, Denise L. and Mu, Yunxiang and Unal, Berkay and Sundaresh, Suman and Hirst, Siddiqua and Valdez, Conrad and Randall, Arlo and Molina, Douglas and Liang, Xiaowu and Freilich, Daniel A. and Oloo, J. Aggrey and Blair, Peter L. and Aguiar, Joao C. and Baldi, Pierre and Davies, D. Huw and Felgner, Philip L.},
title = {Profiling humoral immune responses to P. falciparum infection with protein microarrays},
journal = {PROTEOMICS},
volume = {8},
number = {22},
publisher = {WILEY-VCH Verlag},
issn = {1615-9861},
url = {http://dx.doi.org/10.1002/pmic.200800194},
doi = {10.1002/pmic.200800194},
pages = {4680--4694},
keywords = {Antigen identification, Plasmodium falciparum, Protein chip, Proteome microarray, Vaccine},
year = {2008},
}
@article {crompton2010,
author = {Crompton, Peter D. and Kayala, Matthew A. and Traore, Boubacar and Kayentao, Kassoum and Ongoiba, Aissata and Weiss, Greta E. and Molina, Douglas M. and Burk, Chad R. and Waisberg, Michael and Jasinskas, Algis and Tan, Xiaolin and Doumbo, Safiatou and Doumtabe, Didier and Kone, Younoussou and Narum, David L. and Liang, Xiaowu and Doumbo, Ogobara K. and Miller, Louis H. and Doolan, Denise L. and Baldi, Pierre and Felgner, Philip L. and Pierce, Susan K.},
title = {A prospective analysis of the Ab response to Plasmodium falciparum before and after a malaria season by protein microarray},
volume = {107},
number = {15},
pages = {6958--6963},
year = {2010},
doi = {10.1073/pnas.1001323107},
publisher = {National Academy of Sciences},
abstract = {Abs are central to malaria immunity, which is only acquired after years of exposure to Plasmodium falciparum (Pf). Despite the enormous worldwide burden of malaria, the targets of protective Abs and the basis of their inefficient acquisition are unknown. Addressing these knowledge gaps could accelerate malaria vaccine development. To this end, we developed a protein microarray containing \~{}23\% of the Pf 5,400-protein proteome and used this array to probe plasma from 220 individuals between the ages of 2{\textendash}10 years and 18{\textendash}25 years in Mali before and after the 6-month malaria season. Episodes of malaria were detected by passive surveillance over the 8-month study period. Ab reactivity to Pf proteins rose dramatically in children during the malaria season; however, most of this response appeared to be short-lived based on cross-sectional analysis before the malaria season, which revealed only modest incremental increases in Ab reactivity with age. Ab reactivities to 49 Pf proteins measured before the malaria season were significantly higher in 8{\textendash}10-year-old children who were infected with Pf during the malaria season but did not experience malaria (n = 12) vs. those who experienced malaria (n = 29). This analysis also provided insight into patterns of Ab reactivity against Pf proteins based on the life cycle stage at which proteins are expressed, subcellular location, and other proteomic features. This approach, if validated in larger studies and in other epidemiological settings, could prove to be a useful strategy for better understanding fundamental properties of the human immune response to Pf and for identifying previously undescribed vaccine targets.},
issn = {0027-8424},
URL = {https://www.pnas.org/content/107/15/6958},
eprint = {https://www.pnas.org/content/107/15/6958.full.pdf},
journal = {Proceedings of the National Academy of Sciences}
}
@article{Trieu2011,
author = {Trieu, Angela and Kayala, Matthew A. and Burk, Chad and Molina, Douglas M. and Freilich, Daniel A. and Richie, Thomas L. and Baldi, Pierre and Felgner, Philip L. and Doolan, Denise L.},
title = {Sterile Protective Immunity to Malaria is Associated with a Panel of Novel P. falciparum Antigens},
volume = {10},
number = {9},
year = {2011},
doi = {10.1074/mcp.M111.007948},
URL = {http://www.mcponline.org/content/10/9/M111.007948.abstract},
eprint = {http://www.mcponline.org/content/10/9/M111.007948.full.pdf+html},
journal = {Molecular & Cellular Proteomics}
}
@article{Finney2014,
author = {Finney, Olivia C. and Danziger, Samuel A. and Molina, Douglas M. and Vignali, Marissa and Takagi, Aki and Ji, Ming and Stanisic, Danielle I. and Siba, Peter M. and Liang, Xiawu and Aitchison, John D. and Mueller, Ivo and Gardner, Malcolm J. and Wang, Ruobing},
title = {Predicting Antidisease Immunity Using Proteome Arrays and Sera from Children Naturally Exposed to Malaria},
volume = {13},
number = {10},
pages = {2646-2660},
year = {2014},
doi = {10.1074/mcp.M113.036632},
URL = {http://www.mcponline.org/content/13/10/2646.abstract},
eprint = {http://www.mcponline.org/content/13/10/2646.full.pdf+html},
journal = {Molecular & Cellular Proteomics}
}
@article{molina2012,
author = "Molina, Douglas M. and Finney, Olivia C. and Arevalo-Herrera, Myriam and Herrera, Socrates and Felgner, Philip L. and Gardner, Malcolm J. and Liang, Xiaowu and Wang, Ruobing",
title = "Plasmodium vivax Pre-Erythrocytic–Stage Antigen Discovery: Exploiting Naturally Acquired Humoral Responses",
journal = "The American Journal of Tropical Medicine and Hygiene",
year = "2012",
volume = "87",
number = "3",
eid = ,
pages = "460-469",
url = "http://www.ajtmh.org/content/journals/10.4269/ajtmh.2012.12-0222",
doi = "10.4269/ajtmh.2012.12-0222"
}
############################ USING PfPv500
@article{King2015FOC,
doi = {10.4269/ajtmh.15-0037},
url = {https://doi.org/10.4269/ajtmh.15-0037},
year = {2015},
month = sep,
publisher = {American Society of Tropical Medicine and Hygiene},
volume = {93},
number = {3{\_}Suppl},
pages = {16--27},
author = {Christopher L. King and D. Huw Davies and Phil Felgner and Elizabeth Baum and Aarti Jain and Arlo Randall and Kevin Tetteh and Christopher J. Drakeley and Bryan Greenhouse},
title = {Biosignatures of Exposure/Transmission and Immunity},
journal = {The American Journal of Tropical Medicine and Hygiene}
}
@article{uplekar2017,
title={Characterizing Antibody Responses to Plasmodium vivax and Plasmodium falciparum Antigens in India Using Genome-Scale Protein Microarrays},
author={Uplekar, Swapna AND Rao, Pavitra Nagesh AND Ramanathapuram, Lalitha AND Awasthi, Vikky AND Verma, Kalpana AND Sutton, Patrick AND Ali, Syed Zeeshan AND Patel, Ankita AND G., Sri Lakshmi Priya AND Ravishankaran, Sangamithra AND Desai, Nisha AND Tandel, Nikunj AND Choubey, Sandhya AND Barla, Punam AND Kanagaraj, Deena AND Eapen, Alex AND Pradhan, Khageswar AND Singh, Ranvir AND Jain, Aarti AND Felgner, Philip L. AND Davies, D. Huw AND Carlton, Jane M. AND Das, Jyoti},
journal={PLOS Neglected Tropical Diseases},
volume={11},
number={1},
url = {https://doi.org/10.1371/journal.pntd.0005323},
pages = {1-17},
doi = {10.1371/journal.pntd.0005323},
year={2017},
publisher={Public Library of Science}
}
############################ ADVANTAGES AND DISADVANTAGES
@article{vigil2010,
title={Defining the humoral immune response to infectious agents using high-density protein microarrays},
author={Vigil, Adam and Davies, D Huw and Felgner, Philip L},
journal={Future microbiology},
volume={5},
number={2},
pages={241--251},
year={2010},
publisher={Future Medicine},
doi={10.2217/fmb.09.127}