Skip to content

ayush9pandey/AutoReduce

Repository files navigation

Automated Model Reduction Tool for SBML models

Python toolbox to automatically obtain reduced model expressions using time-scale separation, conservation laws, and other assumptions.

Build Status codecov PyPI version

Refer to the bioRxiv paper for more details. To run - Go through tutorial files inside tutorials folder then check out some common examples in the examples folder. To check if different tools are working properly, run tests. Contact : Ayush Pandey (apandet at caltech dot edu) for any feedback or suggestions.

Installation

Install the latest version of AutoReduce::

$ pip install autoreduce 

Install with all optional dependencies::

$ pip install autoreduce[all]

Bugs

Report any bugs that you find here. You can also fork the repository on GitHub, and the create a pull request (PR) with any changes. We welcome all changes, big or small, and we will help you make the PR if you are new to git (just create a new issue)

Versions

AutoReduce versions:

  • 0.2.0 (alpha release): To install run pip install autoreduce=0.2.0
  • 0.1.0 (alpha release): To install run pip install autoreduce==0.1.0

License

Released under the BSD 3-Clause License (see LICENSE)

Copyright (c) 2022, Ayush Pandey. All rights reserved.

About

Python based automated model reduction tool for SBML models

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published