forked from BRAINSia/BRAINSTools
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Common.cmake
217 lines (188 loc) · 10.2 KB
/
Common.cmake
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
#-----------------------------------------------------------------------------
# Update CMake module path
#------------------------------------------------------------------------------
set(CMAKE_MODULE_PATH
${${PROJECT_NAME}_SOURCE_DIR}/CMake
${${PROJECT_NAME}_BINARY_DIR}/CMake
${CMAKE_MODULE_PATH}
)
#-----------------------------------------------------------------------------
# Sanity checks
#------------------------------------------------------------------------------
include(PreventInSourceBuilds)
include(PreventInBuildInstalls)
include(itkCheckSourceTree)
include(CMakeDependentOption)
option(${LOCAL_PROJECT_NAME}_INSTALL_DEVELOPMENT "Install development support include and libraries for external packages." OFF)
mark_as_advanced(${LOCAL_PROJECT_NAME}_INSTALL_DEVELOPMENT)
option(${LOCAL_PROJECT_NAME}_USE_QT "Find and use Qt with VTK to build GUI Tools" OFF)
mark_as_advanced(${LOCAL_PROJECT_NAME}_USE_QT)
set(USE_ITKv4 ON)
set(ITK_VERSION_MAJOR 4 CACHE STRING "Choose the expected ITK major version to build BRAINS only version 4 allowed.")
# Set the possible values of ITK major version for cmake-gui
set_property(CACHE ITK_VERSION_MAJOR PROPERTY STRINGS "4")
set(expected_ITK_VERSION_MAJOR ${ITK_VERSION_MAJOR})
if(${ITK_VERSION_MAJOR} VERSION_LESS ${expected_ITK_VERSION_MAJOR})
# Note: Since ITKv3 doesn't include a ITKConfigVersion.cmake file, let's check the version
# explicitly instead of passing the version as an argument to find_package() command.
message(FATAL_ERROR "Could not find a configuration file for package \"ITK\" that is compatible "
"with requested version \"${expected_ITK_VERSION_MAJOR}\".\n"
"The following configuration files were considered but not accepted:\n"
" ${ITK_CONFIG}, version: ${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}\n")
endif()
#-----------------------------------------------------------------------------
# Set a default build type if none was specified
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
message(STATUS "Setting build type to 'Release' as none was specified.")
set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE)
# Set the possible values of build type for cmake-gui
set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release" "MinSizeRel" "RelWithDebInfo")
endif()
if(${ITK_VERSION_MAJOR} STREQUAL "3")
message(FATAL_ERROR "ITKv3 is no longer supported")
endif()
#-----------------------------------------------------------------------------
# Build option(s)
#-----------------------------------------------------------------------------
option(USE_AutoWorkup "Build AutoWorkup" ON)
option(USE_BRAINSFit "Build BRAINSFit" ON)
option(USE_BRAINSLabelStats "Build BRAINSLabelStats" ON)
option(USE_BRAINSStripRotation "Build BRAINSStripRotation" ON)
option(USE_BRAINSROIAuto "Build BRAINSROIAuto" ON)
option(USE_BRAINSResample "Build BRAINSResample" ON)
option(USE_BRAINSDemonWarp "Build BRAINSDemonWarp " ON)
option(USE_GTRACT "Build GTRACT" ON)
option(USE_BRAINSABC "Build BRAINSABC" ON)
option(USE_BRAINSTransformConvert "Build BRAINSTransformConvert" ON)
option(USE_BRAINSTalairach "Build BRAINSTalairach" ON)
option(USE_BRAINSConstellationDetector "Build BRAINSConstellationDetector" ON)
option(USE_BRAINSMush "Build BRAINSMush" ON)
option(USE_BRAINSInitializedControlPoints "Build BRAINSInitializedControlPoints" ON)
option(USE_BRAINSMultiModeSegment "Build BRAINSMultiModeSegment" ON)
option(USE_BRAINSCut "Build BRAINSCut" ON)
option(USE_BRAINSLandmarkInitializer "Build BRAINSLandmarkInitializer" ON)
option(USE_ImageCalculator "Build ImageCalculator" ON)
option(USE_BRAINSSnapShotWriter "Build BRAINSSnapShotWriter" ON)
option(USE_ConvertBetweenFileFormats "Build ConvertBetweenFileFormats" OFF)
option(USE_BRAINSMultiSTAPLE "Build BRAINSMultiSTAPLE" OFF)
option(USE_DWIConvert "Build DWIConvert" ON)
option(USE_BRAINSDWICleanup "Build BRAINSDWICleanup" ON)
option(USE_BRAINSCreateLabelMapFromProbabilityMaps "Build BRAINSCreateLabelMapFromProbabilityMaps" OFF)
if( NOT USE_ANTS )
option(USE_ANTS "Build ANTS" ON)
endif()
## These are not yet ready for prime time.
option(USE_BRAINSContinuousClass "Build BRAINSContinuousClass " OFF)
option(USE_BRAINSSurfaceTools "Build BRAINSSurfaceTools " OFF)
option(USE_ICCDEF "Build ICCDEF " OFF)
option(USE_BRAINSPosteriorToContinuousClass "Build BRAINSPosteriorToContinuousClass" OFF)
option(USE_DebugImageViewer "Build DebugImageViewer" OFF)
option(BRAINS_DEBUG_IMAGE_WRITE "Enable writing out intermediate image results" OFF)
if( USE_AutoWorkup )
## NIPYPE is not stable under python 2.6, so require 2.7 when using autoworkup
## Enthought Canopy or anaconda are convenient ways to install python 2.7 on linux
## or the other option is the free version of Anaconda from https://store.continuum.io/
set(REQUIRED_PYTHON_VERSION 2.7)
if(APPLE)
set(PYTHON_EXECUTABLE
/System/Library/Frameworks/Python.framework/Versions/${REQUIRED_PYTHON_VERSION}/bin/python2.7
CACHE FILEPATH "The apple specified python version" )
set(PYTHON_LIBRARY
/System/Library/Frameworks/Python.framework/Versions/${REQUIRED_PYTHON_VERSION}/lib/libpython2.7.dylib
CACHE FILEPATH "The apple specified python shared library" )
set(PYTHON_INCLUDE_DIR
/System/Library/Frameworks/Python.framework/Versions/${REQUIRED_PYTHON_VERSION}/include/python2.7
CACHE PATH "The apple specified python headers" )
else()
find_package ( PythonInterp ${REQUIRED_PYTHON_VERSION} REQUIRED )
message(STATUS "Found PythonInterp version ${PYTHON_VERSION_STRING}")
find_package ( PythonLibs ${PYTHON_VERSION_STRING} EXACT REQUIRED )
endif()
set(PYTHON_INSTALL_CMAKE_ARGS
PYTHON_EXECUTABLE:FILEPATH
PYTHON_LIBRARY:FILEPATH
PYTHON_INCLUDE_DIR:PATH
)
endif()
if(USE_ICCDEF OR ITK_USE_FFTWD OR ITK_USE_FFTWF)
set(${PROJECT_NAME}_BUILD_FFTWF_SUPPORT ON)
endif()
if(BRAINSTools_USE_QT)
if(NOT QT4_FOUND)
find_package(Qt4 4.6 COMPONENTS QtCore QtGui QtNetwork QtXml REQUIRED)
include(${QT_USE_FILE})
endif()
endif()
#-----------------------------------------------------------------------------
# CMake Function(s) and Macro(s)
#-----------------------------------------------------------------------------
if(CMAKE_VERSION VERSION_LESS 2.8.3)
include(Pre283CMakeParseArguments)
else()
include(CMakeParseArguments)
endif()
#-----------------------------------------------------------------------------
# Platform check
#-----------------------------------------------------------------------------
set(PLATFORM_CHECK true)
if(PLATFORM_CHECK)
# See CMake/Modules/Platform/Darwin.cmake)
# 6.x == Mac OSX 10.2 (Jaguar)
# 7.x == Mac OSX 10.3 (Panther)
# 8.x == Mac OSX 10.4 (Tiger)
# 9.x == Mac OSX 10.5 (Leopard)
# 10.x == Mac OSX 10.6 (Snow Leopard)
if (DARWIN_MAJOR_VERSION LESS "9")
message(FATAL_ERROR "Only Mac OSX >= 10.5 are supported !")
endif()
endif()
#-----------------------------------------------------------------------------
if(NOT COMMAND SETIFEMPTY)
macro(SETIFEMPTY)
set(KEY ${ARGV0})
set(VALUE ${ARGV1})
if(NOT ${KEY})
set(${ARGV})
endif()
endmacro()
endif()
#-----------------------------------------------------------------------------
SETIFEMPTY(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/lib)
SETIFEMPTY(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/lib)
SETIFEMPTY(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/bin)
#-----------------------------------------------------------------------------
SETIFEMPTY(CMAKE_INSTALL_LIBRARY_DESTINATION lib)
SETIFEMPTY(CMAKE_INSTALL_ARCHIVE_DESTINATION lib)
SETIFEMPTY(CMAKE_INSTALL_RUNTIME_DESTINATION bin)
#-------------------------------------------------------------------------
SETIFEMPTY(BRAINSTools_CLI_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_LIBRARY_OUTPUT_DIRECTORY})
SETIFEMPTY(BRAINSTools_CLI_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_ARCHIVE_OUTPUT_DIRECTORY})
SETIFEMPTY(BRAINSTools_CLI_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY})
#-------------------------------------------------------------------------
SETIFEMPTY(BRAINSTools_CLI_INSTALL_LIBRARY_DESTINATION ${CMAKE_INSTALL_LIBRARY_DESTINATION})
SETIFEMPTY(BRAINSTools_CLI_INSTALL_ARCHIVE_DESTINATION ${CMAKE_INSTALL_ARCHIVE_DESTINATION})
SETIFEMPTY(BRAINSTools_CLI_INSTALL_RUNTIME_DESTINATION ${CMAKE_INSTALL_RUNTIME_DESTINATION})
#-------------------------------------------------------------------------
# Augment compiler flags
#-------------------------------------------------------------------------
include(ITKSetStandardCompilerFlags)
if(ITK_LEGACY_REMOVE)
if(CMAKE_BUILD_TYPE STREQUAL "Debug")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${C_DEBUG_DESIRED_FLAGS} " )
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CXX_DEBUG_DESIRED_FLAGS} " )
else() # Release, or anything else
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${C_RELEASE_DESIRED_FLAGS} " )
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CXX_RELEASE_DESIRED_FLAGS} " )
endif()
endif()
#-----------------------------------------------------------------------------
# Add needed flag for gnu on linux like enviroments to build static common libs
# suitable for linking with shared object libs.
if(CMAKE_SYSTEM_PROCESSOR STREQUAL "x86_64")
if(NOT "${CMAKE_CXX_FLAGS}" MATCHES "-fPIC")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
endif()
if(NOT "${CMAKE_C_FLAGS}" MATCHES "-fPIC")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fPIC")
endif()
endif()