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load_orthomcl.rst

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Loading OrthoMCL results

Load OrthoMCL

python manage.py load_orthomcl --file groups.txt
  • Loading this file can be faster if you increase the number of threads (--cpu).
python manage.py load_orthomcl --help
--file Output result from OrthoMCL software.*
--cpu Number of threads

* required fields.

Remove orthology

If, by any reason, you need to remove orthology relationships, you should use the command remove_feature_annotation.

python manage.py remove_feature_annotation --help
--cvterm TERM 'orthologous group'*
--organism ORGANISM Species name. (eg. Homo sapiens, Mus musculus)

* required fields