index.rst

Welcome to PaDRe (Participant Data Repository) documentation! ===========================================================

This library provides an organized way to store and analyze imaging data.

The setup page explains the basics on how to use the library, and the padre and subject pages have the documentation for all of the functions you'll need.

If you're interested in the nuts and bolts of the library, organization explains the internals of the library, and installation explains how to setup a new repository or client machine.

Here are a couple quick examples to get you started, and more full-length examples in examples and tutorial:

Tip

Loop through all the subjects and do something to all their datasets:

import padre as p

for subject in p.subjects():

print 'Processing subject %s' % subject for dset in subject.dsets(): do_something_to_a_dset(dset)

Find all the subjects for a particular experiment and do something to the functional task datasets:

for subject in p.subjects('experiment-name'):
    for dset in subject.dsets('functional-task'):
        do_something_to_a_dset(dset)

Find all subjects in an experiment and do something to all the anatomies that were collected in the same session as a functional task:

for subject in p.subjects('experiment-name'):
    for session in subject.sessions:
        if len(subject.dsets('functional-task',session=session)):
            for dset in subject.dsets('anatomy',session=session):
                do_something_to_an_anatomy(dset)

The Contents

setup examples tutorial padre subject padre_buddy.py organization installation

Indices and tables

• genindex
• modindex
• search