index.rst

MIPTools Documentation

Welcome to the MIPTools User Guide!

MIPTools is a suite of computational tools that are used for molecular inversion probe design, data processing, and analysis.

.. toctree::
  :caption: Quick Start
  :maxdepth: 2

  installation
  quick_start

.. toctree::
  :caption: Guides
  :maxdepth: 2

  guides/probe-design
  guides/analysis-pipeline
  guides/hpcc

.. toctree::
  :caption: Man Pages
  :maxdepth: 1

  app-reference/download-app
  app-reference/demux-app
  app-reference/demux-qc-app
  app-reference/wrangler-app
  app-reference/jupyter-app

.. toctree::
  :caption: Links
  :maxdepth: 1
  :hidden:

  Source Code <https://github.com/bailey-lab/MIPTools>
  CHANGELOG
  license

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• See our Github Issues Page