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I tried it on another project (http://schunk.rtfd.org/) and it worked much better than numpydoc. Also, it will be included into Sphinx with the next release.
We could probably write our docstrings in NumPy format:
https://github.com/numpy/numpy/blob/master/doc/HOWTO_DOCUMENT.rst.txt
Probably the numpydoc extension for Sphinx could be used:
https://github.com/numpy/numpydoc
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