usage_happy2std.rst

happy2std

Description:

This is a utility for registering happy output maps to standard coordinates. NB: this will only work if you have a working FSL installation.

Inputs:

inputfileroot - the root name of the input NIFTI files (up and including the ‘desc’ but not the underscore).

outputdir - The location for the output files

featdirectory - Either a feat-like directory (x.feat or x.ica) or an fmriprep derivativesanat directory where the information needed for registration to standard space can be found

Outputs:

The happy maps, transformed to MNI152 space

Usage:

.. argparse::
    :ref: rapidtide.workflows.happy2std._get_parser
    :prog: happy2std
    :func: _get_parser

    Debugging options : @skip
        skip debugging options