We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Hi
I am getting following error while running dimond for eggnog-mapper.
/g/data/pq84/mano/programs/miniconda3/envs/eggnog-mapper/bin/diamond blastp -d '/g/data/pq84/mano/programs/miniconda3/envs/eggnog-mapper/lib/python3.9/site-packages/data/eggnog_proteins.dmnd' -q '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/ALM023_v2_aa.fasta' --threads 6 -o '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/eggnog_mapper/test.emapper.hits' --tmpdir '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/' --sensitive --iterate -e 0.001 --min-score 60.0 --id 40.0 --query-cover 20.0 -b 0.001 --subject-cover 20.0 --top 3 --outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore qcovhsp scovhsp
Processing query block 1, query iteration 1, reference block 983/8414, shape 1/1, index chunk 2/4. Building reference seed array... [0.028s] Building query seed array... [0.028s] Computing hash join... [0s] Masking low complexity seeds... [0s] Searching alignments... [0s] Deallocating memory... [0s] Processing query block 1, query iteration 1, reference block 983/8414, shape 1/1, index chunk 3/4. Building reference seed array... Killed
Could you please help?
The text was updated successfully, but these errors were encountered:
-b 0.001 is not a good setting for this parameter, why are you using it? How much memory does your machine have?
-b 0.001
Sorry, something went wrong.
No branches or pull requests
Hi
I am getting following error while running dimond for eggnog-mapper.
/g/data/pq84/mano/programs/miniconda3/envs/eggnog-mapper/bin/diamond blastp -d '/g/data/pq84/mano/programs/miniconda3/envs/eggnog-mapper/lib/python3.9/site-packages/data/eggnog_proteins.dmnd' -q '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/ALM023_v2_aa.fasta' --threads 6 -o '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/eggnog_mapper/test.emapper.hits' --tmpdir '/g/data/pq84/mano/metagenome/Diabetes_shotgun/prokka_out/ALM023/ALM023_v2/' --sensitive --iterate -e 0.001 --min-score 60.0 --id 40.0 --query-cover 20.0 -b 0.001 --subject-cover 20.0 --top 3 --outfmt 6 qseqid sseqid pident length mismatch gapopen qstart qend sstart send evalue bitscore qcovhsp scovhsp
Processing query block 1, query iteration 1, reference block 983/8414, shape 1/1, index chunk 2/4.
Building reference seed array... [0.028s]
Building query seed array... [0.028s]
Computing hash join... [0s]
Masking low complexity seeds... [0s]
Searching alignments... [0s]
Deallocating memory... [0s]
Processing query block 1, query iteration 1, reference block 983/8414, shape 1/1, index chunk 3/4.
Building reference seed array... Killed
Could you please help?
The text was updated successfully, but these errors were encountered: