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Tools and examples to study co-occurrences in PubMed articles using Julia
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README.md

PubMedMiner.jl

NOTE: This package is in a state of flux and currently just supports the PubMed Miner Web App - DO NOT USE

This package provides a set of tools and examples to study co-occurrences/comorbidities in PubMed/Medline articles based on MeSH descriptors and UMLS concepts

Installation

Pkg.clone("https://github.com/bcbi/PubMedMiner.jl.git")

Dependencies

PubMedMiner depends on MySQL.jl and DataFrames.jl which should be installed automatially by the package manager when clonning this reposity (via Julia). However, many of the examples provided have additional dependencies that will be described accordingly.

Tools and Examples:

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