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Add plasmid rotation, similar to Unicycler #4

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dfornika opened this issue Jun 29, 2023 · 0 comments · Fixed by #8
Closed

Add plasmid rotation, similar to Unicycler #4

dfornika opened this issue Jun 29, 2023 · 0 comments · Fixed by #8

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@dfornika
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Unicycler has a nice feature in its finalisation stage where it will attempt to 'rotate' any closed circular replicons to start at either dnaA or repA.

As far as we know, flye and dragonflye don't support this feature directly.

Add a step to identify plasmids and rotate them to start at dnaA or repA.
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Rotate plasmids BCCDC-PHL/dragonflye-nf
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@dfornika