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README.Rmd
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README.Rmd
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---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, echo = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "README-"
)
```
# mjbnaturepaper
[](https://travis-ci.org/benmarwick/mjbnaturepaper)
[](https://circleci.com/gh/benmarwick/mjbnaturepaper)
[](https://mybinder.org/v2/gh/benmarwick/mjbnaturepaper/master?urlpath=rstudio)
This repository contains the data and code for our paper:
> Clarkson, Chris, Zenobia Jacobs , Ben Marwick[](https://orcid.org/0000-0001-7879-4531) , Richard Fullagar , Lynley Wallis , Mike Smith , Richard Roberts , Elspeth Hayes , Kelsey Lowe , Xavier Carah , S. Anna Florin , Jessica McNeil , Lee Arnold , Quan Hua , Jillian Huntley , Helen Brand , Andrew Fairbairn , Kate Connell , Kasih Norman , Tiina Manne , James Shulmeister , Tessa Murphy , Lindsey Lyle , Makiah Salinas , Gayoung Park , Mara Page , Colin Pardoe 2017 Human occupation of northern Australia by 65,000 years ago. _Nature_ 547(7663), 306. <https://doi.org/10.1038/nature22968> [[PDF](http://faculty.washington.edu/bmarwick/PDFs/Clarkson_Jacobs_Marwick_2017.pdf)] [[code & data](https://doi.org/10.17605/OSF.IO/QWFCZ)]
Please cite this compendium as:
> Marwick, B. (`r format(Sys.Date(), "%Y")`). _Compendium of R code and data for "Human occupation of northern Australia by 65,000 years ago."_. Accessed `r format(Sys.Date(), "%d %b %Y")`. Online at <https://doi.org/10.17605/OSF.IO/QWFCZ>
## Contents
The **analysis** directory contains:
- [:file_folder: paper](/analysis/): R Markdown source document for the supplementary information. Includes code to reproduce the figures and tables generated by the analysis.
- [:file_folder: data](/analysis/data): Data used in the analysis.
- [:file_folder: figures](/analysis/figures): Plots and other illustrations
## How to run in your broswer or download and run locally
The simplest way to explore the text, code and data is to click on [binder](https://mybinder.org/v2/gh/benmarwick/mjbnaturepaper/master?urlpath=rstudio) to open an instance of RStudio in your browser, which will have the compendium files ready to work with. Binder uses rocker-project.org Docker images to ensure a consistent and reproducible computational environment. These Docker images can also be used locally.
You can download the compendium as a zip from from this URL: [master.zip](/archive/master.zip). After unzipping, open the `Proj` file in RStudio, and run `devtools::install()` to ensure you have the packages this analysis depends on (also listed in the [DESCRIPTION](/DESCRIPTION) file). Then open `paper.Rmd` and knit to produce the `paper.docx`.
### Licenses
**Text and figures :** [CC-BY-4.0](http://creativecommons.org/licenses/by/4.0/)
**Code :** See the [DESCRIPTION](DESCRIPTION) file
**Data :** [CC-0](http://creativecommons.org/publicdomain/zero/1.0/) attribution requested in reuse
### Contributions
We welcome contributions from everyone. Before you get started, please see our [contributor guidelines](CONTRIBUTING.md). Please note that this project is released with a [Contributor Code of Conduct](CONDUCT.md). By participating in this project you agree to abide by its terms.