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env3.7_LINUX.yml
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env3.7_LINUX.yml
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name: picasso_env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- ca-certificates=2021.5.30=ha878542_0
- certifi=2021.5.30=py37h89c1867_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libffi=3.3=h58526e2_2
- libgcc-ng=9.3.0=h2828fa1_19
- libgomp=9.3.0=h2828fa1_19
- libstdcxx-ng=9.3.0=h6de172a_19
- ncurses=6.2=h58526e2_4
- openssl=1.1.1k=h7f98852_0
- pip=21.1.3=pyhd8ed1ab_0
- python=3.7.10=hffdb5ce_100_cpython
- python_abi=3.7=2_cp37m
- readline=8.1=h46c0cb4_0
- setuptools=49.6.0=py37h89c1867_3
- sqlite=3.36.0=h9cd32fc_0
- tk=8.6.10=h21135ba_1
- wheel=0.36.2=pyhd3deb0d_0
- xz=5.2.5=h516909a_1
- zlib=1.2.11=h516909a_1010
- pip:
- absl-py==0.13.0
- aiohttp==3.7.4.post0
- anndata==0.8.0
- argon2-cffi==20.1.0
- async-generator==1.10
- async-timeout==3.0.1
- attrs==21.2.0
- backcall==0.2.0
- bleach==3.3.0
- cached-property==1.5.2
- cachetools==4.2.2
- cffi==1.14.5
- chardet==4.0.0
- colorama==0.4.4
- commonmark==0.9.1
- cycler==0.10.0
- decorator==4.4.2
- defusedxml==0.7.1
- dunamai==1.5.5
- entrypoints==0.3
- et-xmlfile==1.1.0
- fsspec==2021.6.1
- future==0.18.2
- get-version==3.2
- google-auth==1.32.0
- google-auth-oauthlib==0.4.4
- grpcio==1.38.1
- h5py==3.3.0
- idna==2.10
- importlib-metadata==1.7.0
- ipykernel==5.5.5
- ipython==7.25.0
- ipython-genutils==0.2.0
- ipywidgets==7.6.3
- jedi==0.18.0
- jinja2==3.0.1
- joblib==1.0.1
- jsonschema==3.2.0
- jupyter-client==6.1.12
- jupyter-core==4.7.1
- jupyterlab-pygments==0.1.2
- jupyterlab-widgets==1.0.0
- kiwisolver==1.3.1
- legacy-api-wrap==1.2
- llvmlite==0.36.0
- markdown==3.3.4
- markupsafe==2.0.1
- matplotlib==3.4.2
- matplotlib-inline==0.1.2
- mistune==0.8.4
- multidict==5.1.0
- natsort==7.1.1
- nbclient==0.5.3
- nbconvert==6.1.0
- nbformat==5.1.3
- nest-asyncio==1.5.1
- networkx==2.5.1
- notebook==6.4.0
- numba==0.53.1
- numexpr==2.7.3
- numpy==1.21.0
- oauthlib==3.1.1
- openpyxl==3.0.7
- opt-einsum==3.3.0
- packaging==20.9
- pandas==1.2.5
- pandocfilters==1.4.3
- parso==0.8.2
- patsy==0.5.1
- pexpect==4.8.0
- pickleshare==0.7.5
- pillow==8.2.0
- prometheus-client==0.11.0
- prompt-toolkit==3.0.19
- protobuf==3.17.3
- ptyprocess==0.7.0
- pyasn1==0.4.8
- pyasn1-modules==0.2.8
- pycparser==2.20
- pydeprecate==0.3.0
- pygments==2.9.0
- pynndescent==0.5.2
- pyparsing==2.4.7
- pyro-api==0.1.2
- pyro-ppl==1.6.0
- pyrsistent==0.17.3
- python-dateutil==2.8.1
- pytorch-lightning==1.3.7.post0
- pytz==2021.1
- pyyaml==5.4.1
- pyzmq==22.1.0
- requests==2.25.1
- requests-oauthlib==1.3.0
- rich==10.4.0
- rsa==4.7.2
- scanpy==1.6.0
- scikit-learn==0.24.2
- scipy==1.7.0
- scvi-tools==0.11.0
- seaborn==0.11.1
- send2trash==1.7.1
- setuptools-scm==6.0.1
- sinfo==0.3.4
- six==1.16.0
- statsmodels==0.12.2
- stdlib-list==0.8.0
- tables==3.6.1
- tensorboard==2.4.1
- tensorboard-plugin-wit==1.8.0
- terminado==0.10.1
- testpath==0.5.0
- threadpoolctl==2.1.0
- torch==1.9.0
- torchmetrics==0.3.2
- torchsummary==1.5.1
- tornado==6.1
- tqdm==4.61.1
- traitlets==5.0.5
- typing-extensions==3.10.0.0
- umap-learn==0.5.1
- urllib3==1.26.6
- wcwidth==0.2.5
- webencodings==0.5.1
- werkzeug==2.0.1
- widgetsnbextension==3.5.1
- xlrd==1.2.0
- yarl==1.6.3
- zipp==3.4.1
prefix: /home/tchari/miniconda3/envs/mcml3.7