borf

Better ORF predictions

Fast and flexible ORF prediction in python with appropriate defaults for de novo assembled transcripts.

Installation

pip install borf

For basic usage, run borf with an input fasta formatted file as the first argument.

borf input.fa

For a more detailed guide on usage, please see the wiki https://github.com/betsig/borf/wiki

Name		Name	Last commit message	Last commit date
Latest commit History 68 Commits
borf		borf
docs		docs
test_data		test_data
.codecov.yml		.codecov.yml
.coveragerc		.coveragerc
.flake8		.flake8
.gitattributes		.gitattributes
.gitignore		.gitignore
.travis.yml		.travis.yml
AUTHORS.rst		AUTHORS.rst
CONTRIBUTING.rst		CONTRIBUTING.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
README.rst		README.rst
borf-runner.py		borf-runner.py
github_deploy_key_betsig_borf.enc		github_deploy_key_betsig_borf.enc
requirements-dev.txt		requirements-dev.txt
requirements.txt		requirements.txt
setup.cfg		setup.cfg
setup.py		setup.py
versioneer.py		versioneer.py