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pom.xml
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pom.xml
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>uk.ac.qmul.sbcs</groupId>
<artifactId>extract_peptide</artifactId>
<version>1.0-SNAPSHOT</version>
<packaging>jar</packaging>
<name>extract_peptide</name>
<url>http://maven.apache.org</url>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<developers>
<developer>
<name>Jun Fan</name>
<email>j.fan@qmul.ac.uk</email>
<organization>Queen Mary University of London</organization>
</developer>
</developers>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>3.8.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>uk.ac.liv</groupId>
<artifactId>jmzquantml</artifactId>
<version>1.0.0-1.0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>uk.ac.ebi.jmzidml</groupId>
<artifactId>jmzidentml</artifactId>
<version>1.2.3</version>
</dependency>
</dependencies>
<repositories>
<repository>
<id>jmzquantml-maven-repo</id>
<name>Maven Repository for jmzquantml release</name>
<url>http://jmzquantml.googlecode.com/svn/maven/repo</url>
</repository>
<repository>
<id>ebi-repo</id>
<name>The EBI internal repository</name>
<url>http://www.ebi.ac.uk/~maven/m2repo</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
</repositories>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.2.2</version>
<executions>
<execution>
<id>create-executable-jar</id>
<phase>package</phase>
<goals>
<goal>single</goal>
</goals>
<configuration>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
<archive>
<manifest>
<mainClass>uk.ac.qmul.sbcs.extract_peptide.App</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.3.1</version>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<classpathPrefix>lib/</classpathPrefix>
<mainClass>uk.ac.qmul.sbcs.extract_peptide.App</mainClass>
</manifest>
</archive>
</configuration>
</plugin>
</plugins>
</build>
</project>